| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1017 |
|---|
| Symbol | |
|---|
| ID | 4037814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1106373 |
|---|
| End bp | 1107617 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637976398 |
|---|
| Product | polyhydroxyalkanoate depolymerase, intracellular |
|---|
| Protein accession | YP_583172 |
|---|
| Protein GI | 94309962 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0679448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.514648 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTATC AACTGCATGA ATTCCAGCGC ACGATGCTGA ACCCGCTTAC CGCGTGGGCC
CAAGCGACTG CAAAGACATT TACGAACCCC CTCAGCCCCC TTTCACTGGT CCCCGGCGCC
CCTCGGCTGG CAGCAGGCTA CGAACTGCTG TACCGATTGG GAAAAGCCTA CGAAAAGCCG
GAATTCAACA TCAAATCCGT CCGTTCGAAT GGCCGCGACA TTCCGATCGT CGAACAAACC
ATCCTGGACA AGCCGTTCTG CAAGCTGGTG CGCTTCAAGC GCTATGCGGA CGATCCGGAC
ACCATCAAGC TGCTCAAGGA CGAGCCGGTC GTGCTGGTCT GCGCGCCGCT GTCCGGTCAC
CACTCCACGC TGCTGCGCGA TACCGTGCGT ACTTTGCTGC AGGACCACAA AGTCTATGTG
ACCGACTGGG TGGACGCCCG CATGGTGCCG GTGGAGCATG GTGAGTTCCA TCTGTCCGAC
TACATCCGTT ACATCCAGGA GTTCATCCGT CACATTGGCG CGGAGAACCT GAATGTGATC
TCCGTGTGCC AGCCGACTGT GCCGGTGCTC GCCGCGATCT CGCTGATGGC GTCGGCAGGT
GAGAAGACCC CGCGCACCAT GACGATGATG GGTGGCCCGA TCGATGCGCG AAAGAGCGCA
ACGGCGGTCA ACTCGCTCGC CACCAACAAG TCCTACGAGT GGTTCGAGAA CAACGTCATC
TACACGGTGC CGGCCAACTA CCCGGGCCAC GGCCGCCGCG TCTATCCAGG CTTCCTGCAG
CACGCTGGCT TCGTGGCGAT GAACCCGGAC CGCCATGTGT CATCGCACTA TGACTACTAC
CTGAGCCTGG TCCAGGGCGG GTCCGACGAC GCCGAGGCGC ACGTCAAGTT CTATGACGAG
TACAACGCCG TGCTCGACAT GGCGGCCGAG TACTACCTTG AGACGATTCG CACGGTGTTC
CAGGAATTCC GCCTGGCCAA TGGCACGTGG GTCGTCGACG GCGAGCCCGT GCGTCCGCAG
GACATCAAGA GCACTGCCCT GCTGACGATC GAAGGCGAGC TCGACGATAT TTCGGGCGCC
GGCCAGACCG CTGCCGCGCA CGACTTGTGC ACCGGTATCG CGAAAACCCG CAAGCAACAC
CTGACCGCCG AGAAATGCGG CCACTACGGG ATTTTCTCGG GCCGCCGCTG GCGCGATAGC
GTCTATCCGG AACTGCGCGA TTTCATCCGC AAGTACCGCG CCTGA
|
|---|
| Protein sequence | MLYQLHEFQR TMLNPLTAWA QATAKTFTNP LSPLSLVPGA PRLAAGYELL YRLGKAYEKP
EFNIKSVRSN GRDIPIVEQT ILDKPFCKLV RFKRYADDPD TIKLLKDEPV VLVCAPLSGH
HSTLLRDTVR TLLQDHKVYV TDWVDARMVP VEHGEFHLSD YIRYIQEFIR HIGAENLNVI
SVCQPTVPVL AAISLMASAG EKTPRTMTMM GGPIDARKSA TAVNSLATNK SYEWFENNVI
YTVPANYPGH GRRVYPGFLQ HAGFVAMNPD RHVSSHYDYY LSLVQGGSDD AEAHVKFYDE
YNAVLDMAAE YYLETIRTVF QEFRLANGTW VVDGEPVRPQ DIKSTALLTI EGELDDISGA
GQTAAAHDLC TGIAKTRKQH LTAEKCGHYG IFSGRRWRDS VYPELRDFIR KYRA
|
|---|
| |