| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1016 |
|---|
| Symbol | |
|---|
| ID | 4037813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1105662 |
|---|
| End bp | 1106294 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637976397 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_583171 |
|---|
| Protein GI | 94309961 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00988275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.688061 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAACG AGCCAAGAAC CAAGCGGGAC CCCGAGGGCA CGCGCCGGCG CATTCTGGCT
GCGGCCACGG AAGAGTTTGC CAAGGGCGGG CTGGCCGGCG CGCGCGTCGA CCAGATCGCA
CGCCGTGCCG AGACCAACGA GCGGATGCTG TATTACTACT ACGGCAGCAA GGAGGGCTTG
TTCCTGGCGG TGCTCGAAAA GCAGTATGCG GAATTTCGCG CGGACGAGGA GCGTCTCCAC
ATCACCGACG AAGACCCGGT TGCCGCCGTC CGCACGCTGG CCCGCTTCGT CTGGGACTGG
TATTACAAGC ATCCGGAGTT TATCCGGCTG GTGAACAGCG AGAACCTGCA CGAGGCGCGG
CACCTGAAGA AGTCCGCGCA ATTGCATCAG CTCGTCAACC CGGTGGTCGA CGTGCTGGCC
GACATCATCA AGCGAGGACA GAAGCGGGGC CTGTTCCGCG ATGACATCGA CGTGCCGCAG
TTCTATCTGA CCATCTCGGC GCTCGGCTAT TACGTGCTGT CGAATCGTTA CACGATCAGT
GCCGTGATCG GCCGGGACGT GGCCTCGGAG GAGGAGCACG ATCGCTTTGC CGATCTGCAT
ACCGAGATGC TGCTGTCGTA CCTGAAGCGC TGA
|
|---|
| Protein sequence | MSNEPRTKRD PEGTRRRILA AATEEFAKGG LAGARVDQIA RRAETNERML YYYYGSKEGL
FLAVLEKQYA EFRADEERLH ITDEDPVAAV RTLARFVWDW YYKHPEFIRL VNSENLHEAR
HLKKSAQLHQ LVNPVVDVLA DIIKRGQKRG LFRDDIDVPQ FYLTISALGY YVLSNRYTIS
AVIGRDVASE EEHDRFADLH TEMLLSYLKR
|
|---|
| |