Gene Rmet_0888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_0888 
Symbol 
ID4037684 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp972207 
End bp973388 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content64% 
IMG OID637976268 
Productfatty acid desaturase 
Protein accessionYP_583043 
Protein GI94309833 
COG category[I] Lipid transport and metabolism 
COG ID[COG3239] Fatty acid desaturase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.458623 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCCC CATCTGACAC CCTCTCGCCG GCCGACGCCG ACGCGATCTC GCAAGCGCCG 
AATCACGGCA CGAACCGCCC CAAACGCCCG GCCAAGAACA TTCCCCTGCC GGAGCCAATC
GCCTTCGAGG CCCCATTTCC GAATCGCAAG ACGATCCGCA GCTGGCTGAT TCCCCTCGGC
GGCCGCAGCA CCGCGCGCGC GCTGCTTCTG TTCGCGTTCG ATTACGCGCT GTTCGCTGCC
GTACTGGCCG GTGTGGTCCT GGCATCACCC TGGTGGGCCA AGGTTGGGCT CGGCGTGCTG
GCCGGACTGA TCATCGCGCG CCTGTTCATC ATTGGGCACG ATGCCTGCCA CCAGAGCCTG
ACCGACCGTC GTGGCCTGAA CAAGTGGCTG GGCCGGCTCA CGTTCCTGCC GTCGCTCACG
CCTTACAGCC TCTGGGAAGT CGGCCATAAC GTCGTCCATC ATGGTTACAC GAACCTGAAG
GGCTTCGACT TCGTCTGGGC GCCCTACTCG CTCGAGGAAT TCCGCGCGCT GCCGCGCAGC
CGCCGGATTC TGGAGCGCAT CTACCGCAAC GGCCTTGGCG CCGGCCTTTA CTACCTGATC
GAGATCTGGT GGTTCAAGCT GTTCTTCCCC AGCAAGCGCC AGATGGCGAC GCGTCGCCCG
ATCTTCATGT GGGACTGCGC GCTCGTGGGA GCTTTCGGCG CAGTCTGGAT CGGCGCGCTG
GTATGGCTGG CCGTGGCCAC CGGGCAATCC CCGCTGCTGC TGGTCGGCAC CGGCTTCGTG
CTGCCCTTCC TGATCTGGAA CGCCACCGTT GGCTTCGTGC TGTACGTCCA CCATACGCAT
ACCAGCGTGG CGTGGTACGA CACCAAGGCC ATGTGGGCGA AGGCCCAGCC TTTCGTGTCG
ACGACCGTGC ATCTGCGCTT CAACTTCGGC ATCGGCGCGG CCCTGCATCA CATCATGGAG
CACACGGCCC ACCACGTGGA CATGAGCATC CCGCTGTACC AGCTCAAGCG CGCCCAGGCG
CTGCTCGAGC ACGCACTGCC GGGTCGCATC ATCATCGAGA AGTTCTCGTG GCGCTGGTAT
TTCCATACAG CCCACCGCTG CAAGCTCTAC GACTTCAAGG CGCTGTGCTG GACGGATTTC
CGCGGTCGCC AAACCAGCGA AAACGCTCCG ACTCCGGTCT GA
 
Protein sequence
MTAPSDTLSP ADADAISQAP NHGTNRPKRP AKNIPLPEPI AFEAPFPNRK TIRSWLIPLG 
GRSTARALLL FAFDYALFAA VLAGVVLASP WWAKVGLGVL AGLIIARLFI IGHDACHQSL
TDRRGLNKWL GRLTFLPSLT PYSLWEVGHN VVHHGYTNLK GFDFVWAPYS LEEFRALPRS
RRILERIYRN GLGAGLYYLI EIWWFKLFFP SKRQMATRRP IFMWDCALVG AFGAVWIGAL
VWLAVATGQS PLLLVGTGFV LPFLIWNATV GFVLYVHHTH TSVAWYDTKA MWAKAQPFVS
TTVHLRFNFG IGAALHHIME HTAHHVDMSI PLYQLKRAQA LLEHALPGRI IIEKFSWRWY
FHTAHRCKLY DFKALCWTDF RGRQTSENAP TPV