| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0620 |
|---|
| Symbol | |
|---|
| ID | 4037409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 680584 |
|---|
| End bp | 682302 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637975995 |
|---|
| Product | OmpA/MotB |
|---|
| Protein accession | YP_582775 |
|---|
| Protein GI | 94309565 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0730827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGCT ACCCCTACCG CGGCCTGTTC GGCTGGATCG CCGCGCTCGC GCTAGCCTGG
CTGGCGTTCA GCTCTCCCTG GCAGCCTGCG TGGAACCTAT TACTCGGGAC GTTCGTCATC
GCGGTGGTAG GTACCGCCAT CGTGGTAGCC ACACGGCGTG TTCGTGCGCG CCAACGTGCC
TCCCGAGACG TGCTTGAGGC CATCAACGCG TCGCTGGATG CGCTGCCGGG CAACATTCGC
CGCAACACGC CGTTGGCACT GGTGGTGGGA GATCGCGCCG GAGCGCCAGC GCGGGCATTC
GGCGAAGCGC TGGTCCAGAT CACCGATACA GCGATCTGGG TGCGCGTCGA CGATTCAACG
CGGCTAGCGC ACGTAGCCGA TGCACTCAAG CGCTGGCGCG AAGGACAAGG CCCGGACGCC
GTTGCCTGCC TGATTGCTGC GGATCACGCT CGCGACGCCG CCGTGCTGAC CGCCGCACTC
AAGCGCTGGC GTGTCGCCAT TGGCGAAGCC AGCCGGGCCG TTGGCTATTC CTTGCCCGTC
TGCGTTGCCG TCTATGCCGA AGAAGCCGGA GGACCGGCCG ACGATTGCGC ATGGTTCGGC
GTGTCCGGCG CCACCGTCCC TGCAGCCGGA ACGCTGTGCG CGCAGCTTTC GGATCGTCTC
GTGAGCTATC CACAGGCAGC CGTCCCGGCA GACCGCGATG CACACATGCA CCGCGCGGCC
CGCCTCGACG CGCTGGTCAG GTGGGCATCC GGCGCCTTGT TGCCGCCGTT GCGTGACGAG
GGTCGTGATG GCTTGCGCAG CGGCCCTCCC GTCGATATCA CCGCGTTTGG GGTGACCGCC
ATCGACGGTG TGCCGGTCCC GGATTCTCTC TATGCGCGTT TCGTGACGCA AGTAACCGGG
TTGGCACGCG GCCCGGGAGC GGTACGCAAC GCGTCTTATC CCTTGCCGGA GCCGCTACTG
CGCGGCATCG CCTTGCAGCC CGTGCAGCGG GCTATGCCGC GTGCAATGGC GCATGCGTTC
GCCTGGCTCG CGCTCGCCTT CTGCGCAGCG GCTACGGCAT CCGCGTGGCA GAACCGTACC
CTGGTCGCAC GTGTCATGAC CGACATGGCT CGTTATCGAG TGATCGGCCC GGAGCATGAT
GTTGCGCGCG TGGATGCACT GCAGGCACTC AAGCGGGACC GCGATGAGCT CGATCATTAC
AGCCGGTCCG GCGTGCCGCC TCGCCTCGGG TTGGGCTTCT ACCGCGGTGC CGGACTCCTC
GCGCCGCTCA ATACCCTGAT CGCCGCCTAT CAACCCCCGG CGCCGCTGCC CGCGACCATC
GAACTCGACA GCCTGTCGCT CTTCAAGAGC GGTAGCGCGC TGCTCAACCT CGGCTCCAAT
CGCGTGCTGA TCGGTGCGCT GGAGATGATC AAGGCCCATC CCGACAAGCG CGTGCTCGTG
GCTGGGCACA CAGACTCGGT GGGAGATTCG CGGGCCAACC TGAAGCTTTC CGAAGCACGC
GCCGCGTCCG TGCGGGATTG GCTGGCGGAC GCCGCCGACT TGCCGGTCAC CCGCTTTGCC
ATCCAGGGCT ACGGCGAGAC CCGTCCCAAG GCACCCAACG AGCCGGAAGC CGGCCGTGCG
GCCAACCGCC GCGTCGAGAT CACGCTAGTC CCCGATTGTC GCGATGAGCA GCACGACATT
CGGGAATCCC TGGGCCATCC GGCCTGTACA TCGCAGTAG
|
|---|
| Protein sequence | MTGYPYRGLF GWIAALALAW LAFSSPWQPA WNLLLGTFVI AVVGTAIVVA TRRVRARQRA
SRDVLEAINA SLDALPGNIR RNTPLALVVG DRAGAPARAF GEALVQITDT AIWVRVDDST
RLAHVADALK RWREGQGPDA VACLIAADHA RDAAVLTAAL KRWRVAIGEA SRAVGYSLPV
CVAVYAEEAG GPADDCAWFG VSGATVPAAG TLCAQLSDRL VSYPQAAVPA DRDAHMHRAA
RLDALVRWAS GALLPPLRDE GRDGLRSGPP VDITAFGVTA IDGVPVPDSL YARFVTQVTG
LARGPGAVRN ASYPLPEPLL RGIALQPVQR AMPRAMAHAF AWLALAFCAA ATASAWQNRT
LVARVMTDMA RYRVIGPEHD VARVDALQAL KRDRDELDHY SRSGVPPRLG LGFYRGAGLL
APLNTLIAAY QPPAPLPATI ELDSLSLFKS GSALLNLGSN RVLIGALEMI KAHPDKRVLV
AGHTDSVGDS RANLKLSEAR AASVRDWLAD AADLPVTRFA IQGYGETRPK APNEPEAGRA
ANRRVEITLV PDCRDEQHDI RESLGHPACT SQ
|
|---|
| |