| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0601 |
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| Symbol | |
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| ID | 4037390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 650067 |
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| End bp | 651446 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637975976 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_582756 |
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| Protein GI | 94309546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.251315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.72194 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGCCC ACGCAAGGGC CCGAGGCTTG ACGCGCGAGT CACATCGTGA GCCTGAAATA
ATCAGTAATA AGGCGGTCAT ATCTCACATG ACAGCCACGG ACTATGCTTG TCGAGTCAAG
CGACCAATGT CACGCATGTC TGCTTCGCCT CCCCCCCGCC GGCGGCCATT GGCCATAGCC
CTGTACGTCG TCATCGCCAT CGTGGTGGTC TGGCTGGTTG CCAGGCCACT GGGACGATGG
CTGTTCCCGC CCAAGGCCCC GCAGGCGAAC CCGGCCATCG TGGTTACCAC GGCCGCGGCG
CAAGGCGAGG ACGTGGACAT TGGCCTGACC GGCGTCGGCA CAGTCCAGGC CATGCAGACT
GTGACGGTCA AGCCACGCGT GGACGGGCAG CTCGAGCGCG TTGGCTTCGT CGAAGGCCAG
GACGTCAAGG AAGGCCAGGT GCTGGCGCAG ATCGACCCAC GCACGTTCCA GGCGCAACTG
CAGCAGGCGC AGGCCACCAA GGCGCGCGAC GAGGCGCAGC TTGCCAACGC TCGCCTGGAC
CTGAAACGCT ACGAAGAACT GATCAAGGTC GACTCGACCA CGCGCCAGAC ACTCGACACC
CAACGCGCGC TGGTCGACCA GCTTGCCGCC GCCGTGCGCA ATGACGAAGC GCAGATCGCG
CTGGACAAGG TGCAGCTCGA TTTCACGACC ATCACGGCGC CGCTCTCCGG CCGCGTCGGC
GCCCGGCTGG TCGACCCCGG CAATATCGTC CATGCCACCG ACACCACCGG CCTCGTCGTG
ATCCGCCAGA TCGACCCGAT CGACGTCGTC TTCACGCTGC CCGACGACGC CTTCGGCCGC
ATCAACCGCG CGATGCAAGC CAGCCAGTCG CCACTGGTGG TGTTCGCCCA CGAGCGCGGC
ACCGACGCCG ACCTCGGGCA CGGCGGCCTG ATCCTGCTGA ACAACACGAT CGACACCACC
AGCGGCACCA TCCAGCTCAA GGCGCGCTTT CCGAATCCGA AGCACCTGCT GTGGCCGGGC
CAGTACGTCA ACGCCCGGCT CGTGCTGGGC CAGCGTGACC GCGCGGTGGT CATTCCGGCG
TCCGCGGTGC AACGTAACGA TGCCGGTACC TATGTCTATG CGGTGCAGGC GGACCAGACC
GTGAAGCTGC AGCCGGTGGA GGTAGCGGAA CTCCAGGGCG CGCGGGCCGT GATCGCCAAG
GGCGTCCAGG CCGGGGAGCG CGTGGTGGCC GATGGCCAGT ACAAGCTCAA GCCCGGCTCG
CTGATTGCCG AGGCGCCCGC GCGGCCAGGC ACCGCACCGA CTGGCGGGGC GGCCGCCGAG
TCCACTGCCG CCACCTCCCC TGCTGTCGCC GCCAGCGCCA CGGCCGCCGT ACGCCAGTGA
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| Protein sequence | MEAHARARGL TRESHREPEI ISNKAVISHM TATDYACRVK RPMSRMSASP PPRRRPLAIA
LYVVIAIVVV WLVARPLGRW LFPPKAPQAN PAIVVTTAAA QGEDVDIGLT GVGTVQAMQT
VTVKPRVDGQ LERVGFVEGQ DVKEGQVLAQ IDPRTFQAQL QQAQATKARD EAQLANARLD
LKRYEELIKV DSTTRQTLDT QRALVDQLAA AVRNDEAQIA LDKVQLDFTT ITAPLSGRVG
ARLVDPGNIV HATDTTGLVV IRQIDPIDVV FTLPDDAFGR INRAMQASQS PLVVFAHERG
TDADLGHGGL ILLNNTIDTT SGTIQLKARF PNPKHLLWPG QYVNARLVLG QRDRAVVIPA
SAVQRNDAGT YVYAVQADQT VKLQPVEVAE LQGARAVIAK GVQAGERVVA DGQYKLKPGS
LIAEAPARPG TAPTGGAAAE STAATSPAVA ASATAAVRQ
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