| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0548 |
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| Symbol | |
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| ID | 4037337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 583966 |
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| End bp | 585510 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637975923 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_582703 |
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| Protein GI | 94309493 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0261172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAAGA TCGCCGAACC GGGCGGCGCG CTGCTGCTCG ACTACGACGA TGTCGCACGG
CGGGCCATGG AGTCGCTTTT CCGCACCTTC GAGAATTTTA GCGAGGGGAC TTTCGTCGTG
GACGACCAGG CGCGCGTGGT GTGGATCAAC AAGCGCTACG CGGCGCGTTT TGGCTTCAGC
AATCCGCAGG ATGCGATCGG GCTCGATTGC GAGCAGGTGA TTCCGCACAG CCTGATGCGC
GAGGTCGTAA CAACCGGCAA GCCGATCCTG TTGGACATCC TGGAGACAGG GCGCGAGCCG
ATGATCGTCA CGCGCCTGCC GATCAAGGAC GACGAGGGTC GGACCATCGG CGGTGTGGGC
TTCGCATTGT TCGACGAGCT CAAGGCTCTC ACGCCGATCT ATGCCCACTA CGCGCGGGTG
CAGGCCGAAC TGGCTGCCGC GCGGCGATCG CTGGATCAGG CGCGCCGCGC CAAGTACACG
TTCGCGAGCT TCGTTGGCAC CAGCCGGGCG GCGCAGGAGG TCAAGCGTCA GGCGCGCCGG
GCGGCCCAGG TGGAATCGCC GGTGCTGCTG CTCGGCGAGA CCGGCACCGG CAAGGAACTG
CTGGCGCACG GCATTCACGC TGGCTCGGCG CGTGCCGAAA AGCCGCTCGT GACCGTCAAT
GTCTCGGCGA TTCCCGACAC GTTGCTCGAA GTGGAGTTCT TTGGCGCCGC GCCGGGCGCC
TATACCGGTG TCGACCGCAA GGGCCGCGTT GGCAAGTTCG AGCTGGCCGA TGGCGGCACG
CTGTTTCTCG ATGAAATCGG CGACATGCCG CTCGCGCTGC AGAGCAAGTT GCTGCGCGCG
CTCCAGGATC GCGAATTCGA ACCGCTTGGC TCCAACCGGA TCGTGCGATC CGATGTGCGC
ATCATTGCCG CCACGTCCGC CGACCTGCCG GGGCTGGTGG CGGCAGGCAG GTTCCGCCCG
GACCTCTACT ACCGGCTCAA CGTGCTGACC ATCGAACTGC CGCCGCTGCG GGAGCGACTG
GGCGATCTGG TGCCGATGGC CTACGCAATG ATCGAGGAAC TCTGCATCAA GGCTGCCCGG
CAGCCGATGG GGCTGGGCGC GGACGCATTG AAGCTCCTCG GCGAGTACGG CTGGCCGGGC
AACGTACGCG AACTGCGCAA TGTGCTGGAG CGTGTGGTGA TGCTGTGCGA CGAGGATGCG
ATCGACGCCG CGACACTGGC GCCGCTGCTT GGGCTGGGGC GCGTGCCGTC CGCCATCCAT
GCGGGCCCTC AATCGGCACC AGAATCCGCA CCCCATCCGA CGACAGTGAT TCCGGAGACA
CCCGTGCCGC CGGAGGTGGC AGCAGACGTG GCCATCGCCC ACGTCCCCGG CGTTCAGACC
GCGGTGCCCG CGCAATCCTA TGCCGACGCC ATGGCGCAGT TCGAAGCGGC CTTCCTGCAT
CAGGCGCTGG ACGCCTGCGG AGGCCGTGTA GCCGAGGCCG CCGCCCGCAT CGGGCTCAGC
CGCGCGGCGT TCTACAAGAA GCTGGCGGCC GGAAAGGCCA GGTAG
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| Protein sequence | MHKIAEPGGA LLLDYDDVAR RAMESLFRTF ENFSEGTFVV DDQARVVWIN KRYAARFGFS
NPQDAIGLDC EQVIPHSLMR EVVTTGKPIL LDILETGREP MIVTRLPIKD DEGRTIGGVG
FALFDELKAL TPIYAHYARV QAELAAARRS LDQARRAKYT FASFVGTSRA AQEVKRQARR
AAQVESPVLL LGETGTGKEL LAHGIHAGSA RAEKPLVTVN VSAIPDTLLE VEFFGAAPGA
YTGVDRKGRV GKFELADGGT LFLDEIGDMP LALQSKLLRA LQDREFEPLG SNRIVRSDVR
IIAATSADLP GLVAAGRFRP DLYYRLNVLT IELPPLRERL GDLVPMAYAM IEELCIKAAR
QPMGLGADAL KLLGEYGWPG NVRELRNVLE RVVMLCDEDA IDAATLAPLL GLGRVPSAIH
AGPQSAPESA PHPTTVIPET PVPPEVAADV AIAHVPGVQT AVPAQSYADA MAQFEAAFLH
QALDACGGRV AEAAARIGLS RAAFYKKLAA GKAR
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