| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0508 |
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| Symbol | |
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| ID | 4037297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 538842 |
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| End bp | 540398 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637975883 |
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| Product | D-alanyl-D-alanine carboxypeptidase PBP3 |
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| Protein accession | YP_582663 |
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| Protein GI | 94309453 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.125847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCA TGCCAATCCG CCCCTCCCTG CTCCGCCGCA GCCTGTCTCC CGTTATCGCA
ACGGCCGCGC TGCTCGCCTT CGGCCTGACT GGAGCCCAGG CCAAACCCGT CAAATCCGTC
AAAGCCACCA AACCGTCGGT CCAGCGCGTC AGTGCAGAAG CCGCGGACCC GGCCGCCGCG
CGCACCGGCC TGCCCGCTAC TGTCACCACG GCGCTGCGCC GCGCGCATGT GCCGCTGTCG
GCAGCAAGCT TCTACGTGAT CAAGGTCGGC GCGCCGCGCC CGCGTGTGAG CTGGAACGCC
GAGGCGCCGA TGAACCCGGC GTCGACGATG AAGCTGGTCA CCACGTTCGC CGGCCTGCAA
TTGCTCGGGC CCGACTATCG CTGGCTCACT TCGCTCTACG CCGATGGCCA GCCGGGTCCG
GACGGGGTGA TCAACGGCAA CGTCTATCTG CGCGGCCGGG GAGACCCGAA GCTGGTGCCC
GAGGAGATGG CCAAGCTGGT CAACACGGCG CGATCGACAG GCGCAACGGC CATCAACGGC
GATCTCGTGC TCGACCGCAG CTTCTTCGCG GATACCCAGG ACAACAGCTA CACGATCGAT
GGCGAGACGC AACGCGCCTA CAACGTCAAT CCTGATGCGC TGCTTTATGC CTTCAAGACG
CTCACCTTCA CGATCACGCC CGACGCCGCC GGCCGCGCCG TCGACGTGGC CGTCACGCCG
GCGCTGGCGC AATTGCGTGT GGATAACCGC CTGACGCTGG TCAACGGCCG TTGCGGTGAC
TGGCGCGCAC GTGCCAACCC AAGCATCACG CCGCAGTCAG ACGGCACCAT CGTCGCCGCG
TTCGACGGCA ACTACTCCGC CGATTGTGGC GAACACGTGG TCAACCTGGC CACGCTCTCG
CACAGCGATT TCATCTGGGG CGGCTTCGTG GCCGAATGGC AGGCGGCGGG TGGCCGCTTC
GTGCGTCCGC CCGGGCTGCG TGGCGGCACC GTGCCGCGCG GCGCGTTCCT GCTGGCGCGG
CACTACGGCC AGCCGCTCGG CGAGATCGTG CGCGACATCA ACAAGTTCTC GAACAACGTG
ATGGCACGTC AGCTCTTCCT GACGATTGGC GCGGAGATCG ACCGGAGCGG CCCAGCCAGC
ACCGAGAAGT CGACGCGCGT GATCAAGCGC TGGCTATCGC GCCAGGGACT GGACATGCCG
GATCTGGTAC TGGAAAACGG CTCGGGACTG TCACGCGAGG AACGGATCAG CGCTTATGAC
ATGGCGCGTC TGCTGCAACA GGCACTGGCC AGCAATGTTG GGCCGGTGCT GATGGACTCC
CTGCCGATCC TCGGCGTGGA TGGCACCCTG CGCAATCGCC TGACCCGGGC CAATGCGGCC
GGCAATGCCT ACCTGAAGAC GGGCACACTG CAGGACGTAC GCGCGCTGGC GGGCTACGTC
GACGCGCTCG ACGGGCAGCG TTATGTGGTG GTGGCGTATA TCAATCACCC GAACGCATCG
GGAGCGCAGG AGGCGCACGA TGCGTTGATG CAGTGGGTGT ATAAGGGCAC GCCTTGA
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| Protein sequence | MSAMPIRPSL LRRSLSPVIA TAALLAFGLT GAQAKPVKSV KATKPSVQRV SAEAADPAAA
RTGLPATVTT ALRRAHVPLS AASFYVIKVG APRPRVSWNA EAPMNPASTM KLVTTFAGLQ
LLGPDYRWLT SLYADGQPGP DGVINGNVYL RGRGDPKLVP EEMAKLVNTA RSTGATAING
DLVLDRSFFA DTQDNSYTID GETQRAYNVN PDALLYAFKT LTFTITPDAA GRAVDVAVTP
ALAQLRVDNR LTLVNGRCGD WRARANPSIT PQSDGTIVAA FDGNYSADCG EHVVNLATLS
HSDFIWGGFV AEWQAAGGRF VRPPGLRGGT VPRGAFLLAR HYGQPLGEIV RDINKFSNNV
MARQLFLTIG AEIDRSGPAS TEKSTRVIKR WLSRQGLDMP DLVLENGSGL SREERISAYD
MARLLQQALA SNVGPVLMDS LPILGVDGTL RNRLTRANAA GNAYLKTGTL QDVRALAGYV
DALDGQRYVV VAYINHPNAS GAQEAHDALM QWVYKGTP
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