| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0472 |
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| Symbol | |
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| ID | 4037261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 501865 |
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| End bp | 502413 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637975847 |
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| Product | fimbrial protein pilin |
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| Protein accession | YP_582627 |
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| Protein GI | 94309417 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.877435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCGTC AAATCAAGGT TGTTTTCCTG CGCGAACAAC GCCGCGCATT GGAGCGAAAG
AATCGTCGAG GCTTCACGCT GATCGAACTG ATGATCGTTG TCGCGATCAT CGGCATTCTT
GCCGGCGTCG CCATCCCGCA GTACCAGGAC TACATCGCGC GGTCCCAGTT TGCCGAAGGC
ATGAGCCTGG CCTCCGGGCA GAAAGCCGGC GTGATCGAAT CGTTCGCGGC GGCTGGCGCC
TGCCCGAACA ATGCGAGCGC GGCCGTCGAT GGCGTGCCCG TGGCCTCGGC GATCAAGGGG
AGCTATGTAC AGAGCGTCAC CACGGGTGGC ACGGCTTCCA ATGCTGGCGG CTGCACGATC
ATCGCCAAGT TCAAGGACGA AGGTATTACC AGGGGCCTGC TCGGCAAGCA GGTGACGTTG
ACTATGGGTA ATGCAGACGG CGGATCGGTG ACGTGGCAGT GCGAGTCTTC GGCGGACAAG
CGGTACGTGC CGCAGGCCTG CGCGAAAGCG AGTGAGTCGG GTAAGACAAC TACGACGACC
ACGGGCTGA
|
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| Protein sequence | MTRQIKVVFL REQRRALERK NRRGFTLIEL MIVVAIIGIL AGVAIPQYQD YIARSQFAEG
MSLASGQKAG VIESFAAAGA CPNNASAAVD GVPVASAIKG SYVQSVTTGG TASNAGGCTI
IAKFKDEGIT RGLLGKQVTL TMGNADGGSV TWQCESSADK RYVPQACAKA SESGKTTTTT
TG
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