Gene Rmet_0400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_0400 
Symbol 
ID4037187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp428182 
End bp428910 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content62% 
IMG OID637975774 
Productamino acid ABC transporter permease 
Protein accessionYP_582555 
Protein GI94309345 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.123104 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTACG CTTTTCATTG GGGAGTCTTC CTCGAGCAGG CGGCGGCGAA CGAGACCTAC 
CTGGACTGGA TGATTTCCGG TCTCAAGGTG ACGATCGCGC TTGGCCTGTC CTCGTGGATC
ATCGCTCTCG CCATCGGATC GGTGCTGGGC GTGCTGCGCA CCGTGCCGAA CAAGTGGCTG
TCGGGGATCG CCGCCACCTA CGTCGAGATC TTCCGGAACA TTCCGCTGCT GGTGCAGCTT
TTCATCTGGT ACTTCGTCGG CCCCGAACTG CTGCCCGGCG GCGAGGCGAT CAAGCAGATG
AATCCGTTCA CCCAGCAGTT CCTGGCCGCC ATGCTCTGTC TGGGCACCTT CACGGCCGCC
CGGGTTTGCG AACAGGTGCG CTCGGGTATC AATTCGCTGC CGCGCGGCCA GAAGAACGCC
GGCCTGGCGA TGGGTTTCAC GCTGCCGCAG ACGTATCGCT ACGTGCTGCT GCCGATGGCA
TTCCGCGTTA TCGTGCCGCC GCTGACTTCC GAGTTTCTGA ATATCTTCAA GAACTCGGCC
GTGGCGTCGA CGATCGGTCT GCTGGAACTG GCCGCGCAGG GGCGCCAGCT GGTGGACTAC
ACCGCGCGCC CGTATGAGTC GTTCATCGCC GTCACGGTGC TGTACGCGCT CATCAACTTC
ACCGTGATGC TGATCATGCG CTGGGTGGAA CGTCGCACCC GCGTGCCCGG CTTCATCGGT
GGCAAGTAA
 
Protein sequence
MDYAFHWGVF LEQAAANETY LDWMISGLKV TIALGLSSWI IALAIGSVLG VLRTVPNKWL 
SGIAATYVEI FRNIPLLVQL FIWYFVGPEL LPGGEAIKQM NPFTQQFLAA MLCLGTFTAA
RVCEQVRSGI NSLPRGQKNA GLAMGFTLPQ TYRYVLLPMA FRVIVPPLTS EFLNIFKNSA
VASTIGLLEL AAQGRQLVDY TARPYESFIA VTVLYALINF TVMLIMRWVE RRTRVPGFIG
GK