Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_0400 |
Symbol | |
ID | 4037187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 428182 |
End bp | 428910 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637975774 |
Product | amino acid ABC transporter permease |
Protein accession | YP_582555 |
Protein GI | 94309345 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.123104 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTACG CTTTTCATTG GGGAGTCTTC CTCGAGCAGG CGGCGGCGAA CGAGACCTAC CTGGACTGGA TGATTTCCGG TCTCAAGGTG ACGATCGCGC TTGGCCTGTC CTCGTGGATC ATCGCTCTCG CCATCGGATC GGTGCTGGGC GTGCTGCGCA CCGTGCCGAA CAAGTGGCTG TCGGGGATCG CCGCCACCTA CGTCGAGATC TTCCGGAACA TTCCGCTGCT GGTGCAGCTT TTCATCTGGT ACTTCGTCGG CCCCGAACTG CTGCCCGGCG GCGAGGCGAT CAAGCAGATG AATCCGTTCA CCCAGCAGTT CCTGGCCGCC ATGCTCTGTC TGGGCACCTT CACGGCCGCC CGGGTTTGCG AACAGGTGCG CTCGGGTATC AATTCGCTGC CGCGCGGCCA GAAGAACGCC GGCCTGGCGA TGGGTTTCAC GCTGCCGCAG ACGTATCGCT ACGTGCTGCT GCCGATGGCA TTCCGCGTTA TCGTGCCGCC GCTGACTTCC GAGTTTCTGA ATATCTTCAA GAACTCGGCC GTGGCGTCGA CGATCGGTCT GCTGGAACTG GCCGCGCAGG GGCGCCAGCT GGTGGACTAC ACCGCGCGCC CGTATGAGTC GTTCATCGCC GTCACGGTGC TGTACGCGCT CATCAACTTC ACCGTGATGC TGATCATGCG CTGGGTGGAA CGTCGCACCC GCGTGCCCGG CTTCATCGGT GGCAAGTAA
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Protein sequence | MDYAFHWGVF LEQAAANETY LDWMISGLKV TIALGLSSWI IALAIGSVLG VLRTVPNKWL SGIAATYVEI FRNIPLLVQL FIWYFVGPEL LPGGEAIKQM NPFTQQFLAA MLCLGTFTAA RVCEQVRSGI NSLPRGQKNA GLAMGFTLPQ TYRYVLLPMA FRVIVPPLTS EFLNIFKNSA VASTIGLLEL AAQGRQLVDY TARPYESFIA VTVLYALINF TVMLIMRWVE RRTRVPGFIG GK
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