| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0350 |
|---|
| Symbol | |
|---|
| ID | 4037137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 369684 |
|---|
| End bp | 370646 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637975724 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_582505 |
|---|
| Protein GI | 94309295 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTATC CCGTCCCCCG TCATGCGTGG TCCCTGCTGA TCATGGCAGC GGCACTGGCC
GCGTGCGGCA ATGACAAGCC CGTCAGTTGG CAAGGCTACG TGGAGGGCGA GTTCGTCTCT
GTGGCGTCGC CATTCGCGGG CCGCCTGGAA AAGCTGTCGG TCGACCGTGG CCAGCAGGTG
GCCGATGGTG CGCCCCTATT CGTGCTGGAA TCCGACGACG AACGCGCCGC GCGGCAACAA
GCCGCCGAGC AGCTACGTGC GGCCGAGGCA CAGCTTGCCG ATATCCAGAT TGGCAAGCGC
CCCGTGGAAG TGGCCGTGAC CCAGGCGCAA CTGTCGCAGG CGCAGGCGCA GGCCCAACGC
AGCGCGGCGC AACGCCGGCG CGACGAAGCC CAGTTCGAGA TCGGCGGCGT CTCCAGGCAG
CAGCTCGACG ACAGCCGCGC CACGGCGGAT GCGGATGCGG CACGCGTGCG GGAGTTGCAG
CGCGATATCG ACGTCGCACG CCTGCCGGGT CGCAAGGACC AGCTTGCCGC GCAAAGCGCG
CAGGTGGATG CCGCGCGTGC GGCGCTGACG CAGGCCGAGT GGAAGCTCTC GCGCAAGTTC
GTCAATGCCA CGGTGCCGGG CCTGGTCTAT GACGTGCCGT TCCGCCCCGG CGAGTGGGTG
CCCGCGGGCA GCACCGTGGT CCGCATGTTG CCCGTCACAA ACGTCAAGGT GCGCTTCTAC
GTACCTGAGA CCGTGGTCGG CGCGCTCAAG AACGGGCAGG CCGTCCATAT CCGCTGCGAC
GGTTGCGCGG CCCCGGTGGC GGCAAAGATC ACCTATATCT CGAACGAAGC CGAGTTCACG
CCACCGGTCA TCTACAGCAA CGAGACACGC CGCAAGCTCG TGTTCCTGAT CGAGGCACGT
CCGGACCCCG CCGAAGCACC GAAGCTGCGC CCTGGCCAGC CTGTCGAGGT CACGCAATCA
TGA
|
|---|
| Protein sequence | MSYPVPRHAW SLLIMAAALA ACGNDKPVSW QGYVEGEFVS VASPFAGRLE KLSVDRGQQV
ADGAPLFVLE SDDERAARQQ AAEQLRAAEA QLADIQIGKR PVEVAVTQAQ LSQAQAQAQR
SAAQRRRDEA QFEIGGVSRQ QLDDSRATAD ADAARVRELQ RDIDVARLPG RKDQLAAQSA
QVDAARAALT QAEWKLSRKF VNATVPGLVY DVPFRPGEWV PAGSTVVRML PVTNVKVRFY
VPETVVGALK NGQAVHIRCD GCAAPVAAKI TYISNEAEFT PPVIYSNETR RKLVFLIEAR
PDPAEAPKLR PGQPVEVTQS
|
|---|
| |