| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0335 |
|---|
| Symbol | |
|---|
| ID | 4037122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 352361 |
|---|
| End bp | 353860 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637975709 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_582490 |
|---|
| Protein GI | 94309280 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.825805 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAACG ATCGAAGGCG GTTCCTTGTC ATCGGCGCCC GCGCACTGGC CGGCGCTTCC
ATCACGTGGT CAGGACTGGC GGCGGCAGCG ACGCCCGCCA TTCCAGCTCC CAAGGAAAAA
CGGCTCACCC CTCCGCGCCA GCTCAACCTG ACCAACAAAC CCTGGACCGG TGACTTCGAT
GGCATGTTCA AGCACCGCAC CATTCGCGTG CTGGTGCCCT ACAGCCGCAC CCTGTACTTC
AACGACCGGG GACGCGAGCG GGGCGTCACG GCGGACACCG TGCGGGATTT CGAGCGCTAT
ATCAACAAGA CCATGGCCGC TCAGCTTGCC AAGCGGCCGC TCACGGTCTA CATGATTCCG
GTCACGCGCG ACCGTTTGCT GCCCGATCTC AATGCCGGTC TTGGCGACAT CGCAGCCGGC
AATCTCACGG TCACCGACTC CCGGCTCAAG CAAGCGGACT TCATTGTCGG GCAGACCAGC
AAGCCGATCC GGGAGCTGGT CATCACGGGC CCGAAATCCC CCACGCTTGC CACGCTCGAC
GACCTGGCTG GCAAGGCCGT GCACGTGCGC CCCAGCAGCA GCTACTACGA AAGCCTGACC
GCGTTGAACG ACCGCTTCCG TAAGGCCGGC AAACCGCAGA TGCACCTGGT GCTGCTACCC
GACGCGCTGG AGGACGAAGA CGCACTGGAA ATGCTCAACG CCGGCACGCT GCAGATCCTG
GTGGTCGACG ACTGGAAGGC GCGCATCTGG GCCCAGATCC TGAAGCGCAT CAAGGTTCGC
GATGACCTCG CGGTACGTGA AGGCAGCAAG ATCGGCTGGG CAATCCGCAA AGGCAGTCCA
AAGCTGAACG CGGTCCTCGT GGACTACAAC GACAACTTCA TCAAGAAGCA GGGCATCGCC
GACTACCGGC TGAAGCAATA CATGAAGGTC ATCAAGCAGA TCTCGGACAA CACCAACGGC
GCGGAGATCA AGCGGTTCCA GGACACCCTG GCGTTCTTCG AGAAGTACGG CAAGCTCTAC
CATTTCGATC CGCTGATGCT GGCGGCGCAG GGCTTCCAGG AGTCCCAGCT CAATCAGAAC
GCGCGTAGCC ATGTGGGAGC GATCGGTGTC ATGCAGATCA TGCCGGCCAC TGGGAGGGAA
CTGAACGTCG GCAGCATCAA GATCACCGAA TCCAATATCC ACGCGGGTAC CAAATACCTG
GACCAGCTGA TGACGAGGTA CTTCTCCGAT GCGAATTTCT CGGAATCTGA CCGGCCACTG
TTTGCATTCG CCAGCTACAA CGCCGGGCCG GGAAATATCT CCAAGATGCG CACCGAAGCC
AAGGCTCGGG GCCTGAACCC GGACAAGTGG TTCAACAACG TCGAGATCGT GACCTCCGAG
CGGATCGGCA TCGAGACCAC CACCTACGTG CGCAACATCT ACAAGTACTA CGCCGCCTAC
AAGCTGATCG AGGATGCGCA GGAAGAACGA AGCCGCGCCA TGAAGAAGGT AGCCGGGTAA
|
|---|
| Protein sequence | MVNDRRRFLV IGARALAGAS ITWSGLAAAA TPAIPAPKEK RLTPPRQLNL TNKPWTGDFD
GMFKHRTIRV LVPYSRTLYF NDRGRERGVT ADTVRDFERY INKTMAAQLA KRPLTVYMIP
VTRDRLLPDL NAGLGDIAAG NLTVTDSRLK QADFIVGQTS KPIRELVITG PKSPTLATLD
DLAGKAVHVR PSSSYYESLT ALNDRFRKAG KPQMHLVLLP DALEDEDALE MLNAGTLQIL
VVDDWKARIW AQILKRIKVR DDLAVREGSK IGWAIRKGSP KLNAVLVDYN DNFIKKQGIA
DYRLKQYMKV IKQISDNTNG AEIKRFQDTL AFFEKYGKLY HFDPLMLAAQ GFQESQLNQN
ARSHVGAIGV MQIMPATGRE LNVGSIKITE SNIHAGTKYL DQLMTRYFSD ANFSESDRPL
FAFASYNAGP GNISKMRTEA KARGLNPDKW FNNVEIVTSE RIGIETTTYV RNIYKYYAAY
KLIEDAQEER SRAMKKVAG
|
|---|
| |