Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_0303 |
Symbol | |
ID | 4037090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 318618 |
End bp | 320096 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637975677 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_582458 |
Protein GI | 94309248 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.152498 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCAT CGCTTCAGCT TCGACTTTCC CAGCATCTGG CTCTGACTCC TCAACTGCAG CAGTCCATCC GGCTGCTGCA GTTATCCACA CTGGAGCTGC AACAGGAAGT CGAGCAGGCG CTGACCGAGA ATCCACTGCT CGAACGCGAG AACGACTGGA TCGAAAGCCC GCTGCGCGTG GCCGCGGACG GGTCGGTCAA CGTGCAAAGC GCCCCGGCGC CAGCATCTTC CGAACCGCAA GGTAACGGCG ACGATCGCGC GAACGGCGCC AATGGCGAAG ACGACAGCTA CGGCGACAGC GCGGGTGACG ATTACGGCAG CGACTGGAGC CTGGACGATT TCGCTCGCCG GCCTCAGGGC GATGATGACG AGAAGACGCC GATGCAGCTT CGCGAAGCGG AACCCACGCT GCGCGAATAC CTGATGGAAC AGCTCACGCC GCTGAAGATC TCCACGCGTG ACAAGGGCCT GGCCATCTTC CTGATCGAGT CGCTTGACGA CGACGGCTAC CTGGGCGCAA CGCTCGACGA GATCTGTTCG GAACTGCCCA AGGAACTCGA ATTCGAAGTC GATGAAGTGC AGGCGATACT GACCCTGCTG CAGAGCTTCG ACCCGCCTGG CGTGGGTGCG CGCAACGCGG CGGAATGCCT CACCCTGCAA CTGCGCCGTC TGCAACATCC GCAGCGGGAC CTTGCATTAT CGATCGTCAA CCACCACCTG GAGTTATTGG CCGTGCGTGA CTACACGCGG CTCAAGAAAG CCCTGCAGGT TGACGAAATT GCACTTAAGG CCGCGCACGA TCTGATCCGC TCGCTCGCAC CGTATCCCGG ACATGCCTAC AGCCGTCCGG AAGCGGACTT CGTGGTACCG GATGTGTTCG TGCGCAAGAG TGGCAGTAGC TGGATCGCAC AGCTCAATCC CGACGTGATG CCGCGTCTGC GCATCAACGA CATGTACGCG CAGATTTTGC GCGGTGCAAA AGGGGAAGCG GGCGCGGCCG GGCTGCAGCA GAAGCTCCAG GAGGCGCGGT GGCTCATCAA GAACATTCAG CAGCGTTTCG ACACGATCCT GCGTGTTGCG CAGGCAATTG TGGAGCGTCA AAGGAACTTT TTCTCGCACG GGGAAATCGC GATGCGCCCC TTGGTTTTGC GGGAGATTGC CGATACACTG GGTCTACACG AGTCGACCAT TTCCCGGGTG ACTACGAATA AATACATGGC CACGCCGATG GGTACTTTCG AGTTGAAGTA CTTCTTTGGT AGCCACGTCT CCACGGAGAC TGGCGGCGCG GCCTCATCCA CGGCGATCCG CGCGCTGATC AAGCAACTGA TAGGAGCCGA AGAACCCAGG AATCCCCTTT CCGACAGCCG CATCGCCGAG TTGCTGGGCG AACAGGGCTT TGTGGTCGCA CGCCGCACGG TGGCCAAGTA CCGCGAAGCG CTGAAGATCC CCGCAGTCAA TCTCCGCAAG ACTTTGTAG
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Protein sequence | MKPSLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVEQA LTENPLLERE NDWIESPLRV AADGSVNVQS APAPASSEPQ GNGDDRANGA NGEDDSYGDS AGDDYGSDWS LDDFARRPQG DDDEKTPMQL REAEPTLREY LMEQLTPLKI STRDKGLAIF LIESLDDDGY LGATLDEICS ELPKELEFEV DEVQAILTLL QSFDPPGVGA RNAAECLTLQ LRRLQHPQRD LALSIVNHHL ELLAVRDYTR LKKALQVDEI ALKAAHDLIR SLAPYPGHAY SRPEADFVVP DVFVRKSGSS WIAQLNPDVM PRLRINDMYA QILRGAKGEA GAAGLQQKLQ EARWLIKNIQ QRFDTILRVA QAIVERQRNF FSHGEIAMRP LVLREIADTL GLHESTISRV TTNKYMATPM GTFELKYFFG SHVSTETGGA ASSTAIRALI KQLIGAEEPR NPLSDSRIAE LLGEQGFVVA RRTVAKYREA LKIPAVNLRK TL
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