Gene Rmet_0303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_0303 
Symbol 
ID4037090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp318618 
End bp320096 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content61% 
IMG OID637975677 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_582458 
Protein GI94309248 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.152498 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCAT CGCTTCAGCT TCGACTTTCC CAGCATCTGG CTCTGACTCC TCAACTGCAG 
CAGTCCATCC GGCTGCTGCA GTTATCCACA CTGGAGCTGC AACAGGAAGT CGAGCAGGCG
CTGACCGAGA ATCCACTGCT CGAACGCGAG AACGACTGGA TCGAAAGCCC GCTGCGCGTG
GCCGCGGACG GGTCGGTCAA CGTGCAAAGC GCCCCGGCGC CAGCATCTTC CGAACCGCAA
GGTAACGGCG ACGATCGCGC GAACGGCGCC AATGGCGAAG ACGACAGCTA CGGCGACAGC
GCGGGTGACG ATTACGGCAG CGACTGGAGC CTGGACGATT TCGCTCGCCG GCCTCAGGGC
GATGATGACG AGAAGACGCC GATGCAGCTT CGCGAAGCGG AACCCACGCT GCGCGAATAC
CTGATGGAAC AGCTCACGCC GCTGAAGATC TCCACGCGTG ACAAGGGCCT GGCCATCTTC
CTGATCGAGT CGCTTGACGA CGACGGCTAC CTGGGCGCAA CGCTCGACGA GATCTGTTCG
GAACTGCCCA AGGAACTCGA ATTCGAAGTC GATGAAGTGC AGGCGATACT GACCCTGCTG
CAGAGCTTCG ACCCGCCTGG CGTGGGTGCG CGCAACGCGG CGGAATGCCT CACCCTGCAA
CTGCGCCGTC TGCAACATCC GCAGCGGGAC CTTGCATTAT CGATCGTCAA CCACCACCTG
GAGTTATTGG CCGTGCGTGA CTACACGCGG CTCAAGAAAG CCCTGCAGGT TGACGAAATT
GCACTTAAGG CCGCGCACGA TCTGATCCGC TCGCTCGCAC CGTATCCCGG ACATGCCTAC
AGCCGTCCGG AAGCGGACTT CGTGGTACCG GATGTGTTCG TGCGCAAGAG TGGCAGTAGC
TGGATCGCAC AGCTCAATCC CGACGTGATG CCGCGTCTGC GCATCAACGA CATGTACGCG
CAGATTTTGC GCGGTGCAAA AGGGGAAGCG GGCGCGGCCG GGCTGCAGCA GAAGCTCCAG
GAGGCGCGGT GGCTCATCAA GAACATTCAG CAGCGTTTCG ACACGATCCT GCGTGTTGCG
CAGGCAATTG TGGAGCGTCA AAGGAACTTT TTCTCGCACG GGGAAATCGC GATGCGCCCC
TTGGTTTTGC GGGAGATTGC CGATACACTG GGTCTACACG AGTCGACCAT TTCCCGGGTG
ACTACGAATA AATACATGGC CACGCCGATG GGTACTTTCG AGTTGAAGTA CTTCTTTGGT
AGCCACGTCT CCACGGAGAC TGGCGGCGCG GCCTCATCCA CGGCGATCCG CGCGCTGATC
AAGCAACTGA TAGGAGCCGA AGAACCCAGG AATCCCCTTT CCGACAGCCG CATCGCCGAG
TTGCTGGGCG AACAGGGCTT TGTGGTCGCA CGCCGCACGG TGGCCAAGTA CCGCGAAGCG
CTGAAGATCC CCGCAGTCAA TCTCCGCAAG ACTTTGTAG
 
Protein sequence
MKPSLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVEQA LTENPLLERE NDWIESPLRV 
AADGSVNVQS APAPASSEPQ GNGDDRANGA NGEDDSYGDS AGDDYGSDWS LDDFARRPQG
DDDEKTPMQL REAEPTLREY LMEQLTPLKI STRDKGLAIF LIESLDDDGY LGATLDEICS
ELPKELEFEV DEVQAILTLL QSFDPPGVGA RNAAECLTLQ LRRLQHPQRD LALSIVNHHL
ELLAVRDYTR LKKALQVDEI ALKAAHDLIR SLAPYPGHAY SRPEADFVVP DVFVRKSGSS
WIAQLNPDVM PRLRINDMYA QILRGAKGEA GAAGLQQKLQ EARWLIKNIQ QRFDTILRVA
QAIVERQRNF FSHGEIAMRP LVLREIADTL GLHESTISRV TTNKYMATPM GTFELKYFFG
SHVSTETGGA ASSTAIRALI KQLIGAEEPR NPLSDSRIAE LLGEQGFVVA RRTVAKYREA
LKIPAVNLRK TL