| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0179 |
|---|
| Symbol | cca |
|---|
| ID | 4036964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 186333 |
|---|
| End bp | 187577 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637975551 |
|---|
| Product | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase |
|---|
| Protein accession | YP_582334 |
|---|
| Protein GI | 94309124 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.468455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTGT ACGCAGTGGG CGGCGCCGTC CGCGACCAGT TGCTCGGAAA GCCGAGCCAG
GACCGTGACT ACGTGGTGGT GGGCGCCACG CCCGCGGACA TGGAGGCCGC CGGCTTCAAG
CCGGTGGGCA AGGATTTCCC CGTTTTCCTC CATCCGCACA CCAAGGCCGA GTACGCGCTG
GCGCGGACCG AACGCAAGAC CGCGGTCGGC TACAAGGGCT TTGCCTTCTA TACCGGCGCC
GACGTGACCC TGGAAGAGGA CCTCGTCCGG CGCGACCTGA CCATCAACGC GATGGCCCAG
GCGGTGGACG AGCATGACAA CCTCGTCGGC CCGGTGATCG ACCCCTATGG CGGCCAGAAG
GACCTGGCCG CGCGCAAATT CCGCCACGTG TCCGACGCCT TCGCCGAGGA TCCGGTGCGT
ATCCTGCGCG TGGCGCGTTT CGCGGCGCGC TTTCACGAAT TCACGGTGGC GCCGGAGACC
GTCGCGCTGA TGCGCAAGAT CGTCGACGCG GGCGAGGTGG ATGCGCTGGT GCCCGAGCGC
GTCTGGCAGG AACTGTCTCG CGGGTTGATG GAGGCAAAGC CGTCACGCAT GTTCGACGTG
CTGCGCGAAT GCGGCGCGCT GGCCCACCTG CTGCCGGAAC TCGATCGCCT ATGGGGCGTG
CCCCAGCGCC CGGAATATCA TCCCGAAGTC GATACCGGCG TGCACGTGAT GATGGTGATC
GACTACGCGG CCAGCGTCGG CGCATCGCTG CCGGTGCGCT TCGCCGCGAT GGCGCACGAC
CTCGGCAAGG GCACCACGCC CGAGGACATG CTGCCCCGGC ACATCGGCCA CGAGCAACGT
GGCGTCAAAT TGCTCGAAGC CATCTGCCAG CGCCTGCGCG TGCCGAACGA TTGCCGTGAG
CTGGCCCTGG TGGTGGCGCG CGAGCACGGC AATATCCATC GCAGCACGGA GTTCGGCGCG
GCGGCACTGA CGCGGCTGGT CGAGCGTTGC GACGCGCTGC GCAAGCCGGA GCGGTTCGCT
GAGGCGCTGC TGGCCTGCGA GGCCGATGCG CGTGGACGCC TGGGTTTTGC GGATAAGGAC
TACCCGCAGG CGGATCGCCT GCTAGCTGCG CGTGACGCGG CGGCATCCGT GGACGCCGGC
GCGATTGCCA AGGCTTGCGG GGACAAGGTC GATCAGATCA AGGACCGGGT GCACAAGGCC
AGGGTGGCGG CGGTGGCGCA GCGGCTGGGA ATGGCGGAGG AATAG
|
|---|
| Protein sequence | MQVYAVGGAV RDQLLGKPSQ DRDYVVVGAT PADMEAAGFK PVGKDFPVFL HPHTKAEYAL
ARTERKTAVG YKGFAFYTGA DVTLEEDLVR RDLTINAMAQ AVDEHDNLVG PVIDPYGGQK
DLAARKFRHV SDAFAEDPVR ILRVARFAAR FHEFTVAPET VALMRKIVDA GEVDALVPER
VWQELSRGLM EAKPSRMFDV LRECGALAHL LPELDRLWGV PQRPEYHPEV DTGVHVMMVI
DYAASVGASL PVRFAAMAHD LGKGTTPEDM LPRHIGHEQR GVKLLEAICQ RLRVPNDCRE
LALVVAREHG NIHRSTEFGA AALTRLVERC DALRKPERFA EALLACEADA RGRLGFADKD
YPQADRLLAA RDAAASVDAG AIAKACGDKV DQIKDRVHKA RVAAVAQRLG MAEE
|
|---|
| |