Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_0176 |
Symbol | |
ID | 4036961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 182381 |
End bp | 184348 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637975548 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_582331 |
Protein GI | 94309121 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.364255 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGAAGG GAGTATATCT GCGCCGTGCC GGGCGCTTCG CCTGGCTTGC GTTCGCAGGT GCGCTGCTGG CTACCCCAGT CTACGCGCAG AAACGTACGG CGACGCCCCA GAAAGCGGTA CAGCAGCAAC CGGCCGCCCT GACGATTCCG TCGGACCCGG ACGATGCCTT CGTCGCGCTG CGCGAGGCCG CCCGCAAGAA TGACGCGGAC CGCGCCGCGG CCATCTCGGC CACGCTGGTC GACTATCCGA TTCCGTCGTA CGTCGAATAC TTCCGCATCA AGTCGCAGAT GTTCGACTCG AGCGGCCAGC CCCTGATCGA TACGCCGGAT GCCGAGATCA GCGCGTTCCT GCAACGCTAC CAGGGCGAGG CGATTGCCGA CCGGATGCGC AATGACTGGC TGCTGGTGCT GGGCAAGAAG CGCGACTGGG CCAACTTCGA TGTCCAGTAT CCGCAGTTCG TGCTGAAGGA CGATACGCAG GTGGAGTGCT ACGCGCTGCT GTCGCGCGCG CTCAAGGGCC AGAACGTGGC CGCCGATGCG CGTGCGATGC TGGTCGATCC GCGCTACTAC GGCGACGGCT GTGTCGACCT GATCAGCTAC ATGGCGCAGA GCCAGCAGAT CCAGCGCGGC GACGTGGCTT TCCAGGCACG CCAGGCGCTG GAGCAGAACT ACACGACGCT GGCCGGCAAG ATCGCCGCAG CGTTGCCCGA TGCGCGCGTG GATGGCGATT CGCTGGCCAC CGTGGTCAAG ATGGCACGTA ATGATCCCTC GCAGGCCGCC GCCTACATGG GCACGATCTC GGGCAACCTG TCGCGCGACG AGCAGGGTGC GGCCTGGGGC GTGATTGGCC AGTTCGCGGC CAAGAAGCTG ATGCCGGAGG CTGCCGGCTA CTACCGTCGC CAAATGGACC TGGGCGGTAA CCAGTGGCTG TCCGATGAGT CGCAGGAATG GCGCGTGCGG GCCGCGTTGC GTCAGGGCGA CTGGAAGCAG GTGCGCCAGT CCATCGAATC GATGCGTCCC GAACTGCGTG CCAAGGATCC GGCATGGACG TACTGGTACG CGCGCGCGCT CAAGGCCGAT GGCCGTGGCA GCGATGCCCA GCAGCAGTTC CAGTCGATCG CCGGCCAGTT CAATTTCTAT GGCCAGCTGG CCAGCGAGGA ACTGGGCAAC CGCATCACGA TTCCGACGCG GACCACGGTC AGCGATGCCG AGGCGATGGC GATGCGCTCG CGCGCCGGCT TCACGCGCGC CAAGAAGTTC TATGACCTGA ACCTGCGCTT CGAAGGCAAC CGCGAGTGGA ACTGGGAACT GCGCGGCATG AACGATCGTG ACCTGCTGGC CGCGGCCGAG TACGCGCGCA AGATCGAACT GCTCGACCGT ACCGTCAACA CGTCCGACCG CACCAAGGCC GAGCACGATT TCACGCAGCG CTTCCCGATG CCGTACCGGG ACATCATGCA GCGTGCCACG GACGATGTCG GCCTCGACAT GGCATGGGCC TATGGCCTGA TCCGTCAGGA ATCGCGCTTC ATCATGAATG CGCGTTCGTC GGCGGGCGCG CATGGCCTGA TGCAGGTGAT GCCGGCCACG GCCAAGTACG TCGCGCGCAA GATCGGCATG ACCGATTTCT CGCCGTCGAT GATGGGAGAC CCCAACATCA ACATCATGCT CGGCACCAAC TACATGAGCA TGGTGCTGAC CGATCTGGAC AGCTCCTGGA CGCTGGCGTC CGCCGGCTAC AACGCCGGTC CGGGACGGCC CAAGGCGTGG CGTACCAGCC TGTCGCGACC GGTGGAAGGC GCGATCTTTG CAGAGACGAT CCCGTTCACC GAGACGCGGA ACTACGTGAA GAATGTGCTT TCGAACGCCA CGTACTATGC TGCTTTAATG AGTGGCCGGC CCCAGTCCCT GAAAGACCGT CTGGGAATGG TCGCGCCGTC AGCGGTTACG ACGACCAGCC TCCCCTGA
|
Protein sequence | MPKGVYLRRA GRFAWLAFAG ALLATPVYAQ KRTATPQKAV QQQPAALTIP SDPDDAFVAL REAARKNDAD RAAAISATLV DYPIPSYVEY FRIKSQMFDS SGQPLIDTPD AEISAFLQRY QGEAIADRMR NDWLLVLGKK RDWANFDVQY PQFVLKDDTQ VECYALLSRA LKGQNVAADA RAMLVDPRYY GDGCVDLISY MAQSQQIQRG DVAFQARQAL EQNYTTLAGK IAAALPDARV DGDSLATVVK MARNDPSQAA AYMGTISGNL SRDEQGAAWG VIGQFAAKKL MPEAAGYYRR QMDLGGNQWL SDESQEWRVR AALRQGDWKQ VRQSIESMRP ELRAKDPAWT YWYARALKAD GRGSDAQQQF QSIAGQFNFY GQLASEELGN RITIPTRTTV SDAEAMAMRS RAGFTRAKKF YDLNLRFEGN REWNWELRGM NDRDLLAAAE YARKIELLDR TVNTSDRTKA EHDFTQRFPM PYRDIMQRAT DDVGLDMAWA YGLIRQESRF IMNARSSAGA HGLMQVMPAT AKYVARKIGM TDFSPSMMGD PNINIMLGTN YMSMVLTDLD SSWTLASAGY NAGPGRPKAW RTSLSRPVEG AIFAETIPFT ETRNYVKNVL SNATYYAALM SGRPQSLKDR LGMVAPSAVT TTSLP
|
| |