Gene Rmet_0176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_0176 
Symbol 
ID4036961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp182381 
End bp184348 
Gene Length1968 bp 
Protein Length655 aa 
Translation table11 
GC content65% 
IMG OID637975548 
Productlytic transglycosylase, catalytic 
Protein accessionYP_582331 
Protein GI94309121 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.364255 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAAGG GAGTATATCT GCGCCGTGCC GGGCGCTTCG CCTGGCTTGC GTTCGCAGGT 
GCGCTGCTGG CTACCCCAGT CTACGCGCAG AAACGTACGG CGACGCCCCA GAAAGCGGTA
CAGCAGCAAC CGGCCGCCCT GACGATTCCG TCGGACCCGG ACGATGCCTT CGTCGCGCTG
CGCGAGGCCG CCCGCAAGAA TGACGCGGAC CGCGCCGCGG CCATCTCGGC CACGCTGGTC
GACTATCCGA TTCCGTCGTA CGTCGAATAC TTCCGCATCA AGTCGCAGAT GTTCGACTCG
AGCGGCCAGC CCCTGATCGA TACGCCGGAT GCCGAGATCA GCGCGTTCCT GCAACGCTAC
CAGGGCGAGG CGATTGCCGA CCGGATGCGC AATGACTGGC TGCTGGTGCT GGGCAAGAAG
CGCGACTGGG CCAACTTCGA TGTCCAGTAT CCGCAGTTCG TGCTGAAGGA CGATACGCAG
GTGGAGTGCT ACGCGCTGCT GTCGCGCGCG CTCAAGGGCC AGAACGTGGC CGCCGATGCG
CGTGCGATGC TGGTCGATCC GCGCTACTAC GGCGACGGCT GTGTCGACCT GATCAGCTAC
ATGGCGCAGA GCCAGCAGAT CCAGCGCGGC GACGTGGCTT TCCAGGCACG CCAGGCGCTG
GAGCAGAACT ACACGACGCT GGCCGGCAAG ATCGCCGCAG CGTTGCCCGA TGCGCGCGTG
GATGGCGATT CGCTGGCCAC CGTGGTCAAG ATGGCACGTA ATGATCCCTC GCAGGCCGCC
GCCTACATGG GCACGATCTC GGGCAACCTG TCGCGCGACG AGCAGGGTGC GGCCTGGGGC
GTGATTGGCC AGTTCGCGGC CAAGAAGCTG ATGCCGGAGG CTGCCGGCTA CTACCGTCGC
CAAATGGACC TGGGCGGTAA CCAGTGGCTG TCCGATGAGT CGCAGGAATG GCGCGTGCGG
GCCGCGTTGC GTCAGGGCGA CTGGAAGCAG GTGCGCCAGT CCATCGAATC GATGCGTCCC
GAACTGCGTG CCAAGGATCC GGCATGGACG TACTGGTACG CGCGCGCGCT CAAGGCCGAT
GGCCGTGGCA GCGATGCCCA GCAGCAGTTC CAGTCGATCG CCGGCCAGTT CAATTTCTAT
GGCCAGCTGG CCAGCGAGGA ACTGGGCAAC CGCATCACGA TTCCGACGCG GACCACGGTC
AGCGATGCCG AGGCGATGGC GATGCGCTCG CGCGCCGGCT TCACGCGCGC CAAGAAGTTC
TATGACCTGA ACCTGCGCTT CGAAGGCAAC CGCGAGTGGA ACTGGGAACT GCGCGGCATG
AACGATCGTG ACCTGCTGGC CGCGGCCGAG TACGCGCGCA AGATCGAACT GCTCGACCGT
ACCGTCAACA CGTCCGACCG CACCAAGGCC GAGCACGATT TCACGCAGCG CTTCCCGATG
CCGTACCGGG ACATCATGCA GCGTGCCACG GACGATGTCG GCCTCGACAT GGCATGGGCC
TATGGCCTGA TCCGTCAGGA ATCGCGCTTC ATCATGAATG CGCGTTCGTC GGCGGGCGCG
CATGGCCTGA TGCAGGTGAT GCCGGCCACG GCCAAGTACG TCGCGCGCAA GATCGGCATG
ACCGATTTCT CGCCGTCGAT GATGGGAGAC CCCAACATCA ACATCATGCT CGGCACCAAC
TACATGAGCA TGGTGCTGAC CGATCTGGAC AGCTCCTGGA CGCTGGCGTC CGCCGGCTAC
AACGCCGGTC CGGGACGGCC CAAGGCGTGG CGTACCAGCC TGTCGCGACC GGTGGAAGGC
GCGATCTTTG CAGAGACGAT CCCGTTCACC GAGACGCGGA ACTACGTGAA GAATGTGCTT
TCGAACGCCA CGTACTATGC TGCTTTAATG AGTGGCCGGC CCCAGTCCCT GAAAGACCGT
CTGGGAATGG TCGCGCCGTC AGCGGTTACG ACGACCAGCC TCCCCTGA
 
Protein sequence
MPKGVYLRRA GRFAWLAFAG ALLATPVYAQ KRTATPQKAV QQQPAALTIP SDPDDAFVAL 
REAARKNDAD RAAAISATLV DYPIPSYVEY FRIKSQMFDS SGQPLIDTPD AEISAFLQRY
QGEAIADRMR NDWLLVLGKK RDWANFDVQY PQFVLKDDTQ VECYALLSRA LKGQNVAADA
RAMLVDPRYY GDGCVDLISY MAQSQQIQRG DVAFQARQAL EQNYTTLAGK IAAALPDARV
DGDSLATVVK MARNDPSQAA AYMGTISGNL SRDEQGAAWG VIGQFAAKKL MPEAAGYYRR
QMDLGGNQWL SDESQEWRVR AALRQGDWKQ VRQSIESMRP ELRAKDPAWT YWYARALKAD
GRGSDAQQQF QSIAGQFNFY GQLASEELGN RITIPTRTTV SDAEAMAMRS RAGFTRAKKF
YDLNLRFEGN REWNWELRGM NDRDLLAAAE YARKIELLDR TVNTSDRTKA EHDFTQRFPM
PYRDIMQRAT DDVGLDMAWA YGLIRQESRF IMNARSSAGA HGLMQVMPAT AKYVARKIGM
TDFSPSMMGD PNINIMLGTN YMSMVLTDLD SSWTLASAGY NAGPGRPKAW RTSLSRPVEG
AIFAETIPFT ETRNYVKNVL SNATYYAALM SGRPQSLKDR LGMVAPSAVT TTSLP