| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0163 |
|---|
| Symbol | |
|---|
| ID | 4036948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 172044 |
|---|
| End bp | 173276 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637975535 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_582318 |
|---|
| Protein GI | 94309108 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.550604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGG CAAACAATCT CATGACAGCA GTACAGTCCT TCGATGTCGC CATCCTCGGT
GCCGGCCTGG CCGGGCGGTT ATCCGCCTGG CAGCTCGTGC GTGCCGGCGC CCGCGTGGCG
CTGATCGAGC GTGGCGGACC CGACGGCAGC GGCTCGGCCG CGCATGTGGC GGCGGCCATG
CTGGCGCCGC TGGCGGAATC GGCGATTGCC GAGCGCCGCA TCGTCGATCT CGGCATGACC
AGCGTCGATC TCTGGCGTAC CTGGATCGGC GAATTGCCAG AGCCCGTGTT CTTCCAGGAG
GACGGCACGC TGGTGGTCTG GCACGCGCGT GACCGCAGCG AGGTGTCGCT GTTCACGGGG
CGTATGCGTG CCGTGGCGCC GCCCGATCTG GTGCAGCAAC GCCTGCGCGC GCTCGACGGC
GAAGGCGTAG GCCAGATCGA GCCGGCCTTG GCGGGGCGCT TTCCGCAAGG CCTGCTGCTG
CAGGGTGAAG GGCAGCTCGA CAACCGAGGC GCGATGCACG CGCTGCTGAA CTGCGCCGTG
ACCGAGGGCT TGCACTGCGT CTGGGAGGCC GGTGACATCG ATGCCGACGC CTTGCCCGCG
CTGGGTATTC GCGCTGGCGT GGTGCTCGAC TGCCGCGGCC TGGGCGCGCG CGCCGCATGG
ACCAATGCGT CCGCGGGCGG CGAGACCGCG CTGCCGGGCC TGCGCGGCCT GCGCGGCGAA
GTTGTGCGCG TCCACGCGCC GGATGTGAAG CTGCATCGCC CGGTGCGACT GCTGCATCCG
CGCTACCCGA TCTATATCGC TCCGAAGCCG AACGATCTCT ACGTGATCGG CGCCACGGAA
CTCGAAAGCG AGGACGAATC GCCAATGAGC GTGCGTTCCG CGCTCGAACT GCTCTCGGCC
GCGCATTCGC TGCATCCAGC GTTCGGCGAG GCGCGCGTGC TCGAACTCAA TGTCCAGCGG
CGGCCAACCC GCCCCGACCA TCTGCCGGCG ATTCGCGTCG ACCAGCAGGC ACGCGTCGTG
CGAGTCAACG GACTCTATCG ACATGGCTGG CTGATCGCGC CGGCCGTGAC GGAGGCTGCG
TGTGCCGTCG TGCGCGCGAT GCTCGGCGGT GACCCCGCCG CGCACGCGGT GCCAGCCGCG
TTGCGCTGGC CCGGCATGAT CGAAGCCGTG CAGGAGCGTG GCACCGCGAT GCTATCGGCT
AGGGCCGGGG CCGGCAGCGG CCTGCTGCAC TAA
|
|---|
| Protein sequence | MPPANNLMTA VQSFDVAILG AGLAGRLSAW QLVRAGARVA LIERGGPDGS GSAAHVAAAM
LAPLAESAIA ERRIVDLGMT SVDLWRTWIG ELPEPVFFQE DGTLVVWHAR DRSEVSLFTG
RMRAVAPPDL VQQRLRALDG EGVGQIEPAL AGRFPQGLLL QGEGQLDNRG AMHALLNCAV
TEGLHCVWEA GDIDADALPA LGIRAGVVLD CRGLGARAAW TNASAGGETA LPGLRGLRGE
VVRVHAPDVK LHRPVRLLHP RYPIYIAPKP NDLYVIGATE LESEDESPMS VRSALELLSA
AHSLHPAFGE ARVLELNVQR RPTRPDHLPA IRVDQQARVV RVNGLYRHGW LIAPAVTEAA
CAVVRAMLGG DPAAHAVPAA LRWPGMIEAV QERGTAMLSA RAGAGSGLLH
|
|---|
| |