| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0162 |
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| Symbol | |
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| ID | 4036947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 170011 |
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| End bp | 171888 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637975534 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_582317 |
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| Protein GI | 94309107 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.268503 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.952557 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGTA CTGCCCCCGC TGCTTCGTTT GAATCGCTCG AAAGCGATCT CGACCAGAAA
TTCGCCTACC CGGCTTCCAG CAAGACCTAT ATCACCGGCA GCCGGCCGGA CATCCGCGTG
CCGCTGCGCA CGATCCTGCA GACCGCCACG CGCACCGAGA AGGGCGAGAT GGCGAACCCG
CCGATTCCCG TCTATGACAC CTCGGGACCG TACAGCGATC CGGACGTGCA TATCGACCTG
AAGGCCGGCC TGCCGCCCGT CCGCGCCAAG TGGATCGAAG AGCGCAACGA CACCGAGGTG
CTGACTGGCC TGTCGTCGGA GTACGGCCTG GCACGCGCCA ATGACCCCGC CACGGCACAC
CTGCGCTTCG CGCAACTGAC GAACCCGCGC CGCGCCAAGG CCGGCGCGAA CGTGTCGCAG
ATGCACTACG CACGCAAGGG CATCATCACG CCCGAAATGG AATACGTGGC GCTGCGCGAA
TCGCTGAACC TGCAGGCGCT CTACGACAAG CCCGAGTACA AGGCGCTGCT GCGACAGCAT
CCGGGCAACG CCCTGGGCGC CGCTCTGCCG CTGCGTCCGG AAGACATGAC GCCGGAATTC
GTGCGCCGCG AAGTGGCCGC CGGCCGCGCC ATCATTCCGG CCAACATCAA CCACACGGAA
CTGGAGCCGA TGGCGATCGG CCGCAACTTC CGCGTCAAGA TCAACGGCAA CCTGGGCAAT
TCGGCGGTGA CGTCGTCGCT GGCCGAGGAA GTGGAAAAGA TGGTGTGGTC GATCCGCTGG
GGCGCCGACA CCATCATGGA TCTGTCCACC GGCAAGCACA TCCACGAAAC GCGCGAGTGG
ATCCTGCGCA ACTCGCCGGT GCCCATCGGC ACGGTGCCCA TCTACCAGGC GCTGGACAAG
ACCGGCGGTA TCGCCGAGGA CCTGACCTGG GAGATGTTCC GCGACACGCT GATCGAGCAG
GCAGAGCAGG GCGTGGACTA CTTCACGATC CACGCCGGCG TGCTGCTGCG CTACGTGCCG
ATGACGGCCG ACCGCGTGAC CGGCATCGTC TCGCGCGGTG GTTCGATCAT GGCCAAGTGG
TGCCTGGCGC ACCACAAGGA AAATTTCCTG TACACGCACT TCGACGAGAT CTGCGAAATC
ATGAAGGCGT ACGACGTGTC GTTCAGCCTG GGTGATGGTC TGCGTCCGGG CTGTATCGCC
GATTCGAACG ATGACGCCCA GTTCGGCGAA CTGCGCACGC TTGGCGAACT GACCGCCAAG
GCGTGGGAGC ACGACGTGCA GGTGATGATC GAAGGCCCGG GCCACGTGCC GCTGCAGCGC
ATCCAGGCCA ACATGGACGA AGAGCTCAAG CACTGCTACG AAGCGCCGTT CTACACGCTG
GGACCGCTGG TCACCGACAT CGCGCCGGGC TACGACCACA TCACCAGCGG CATTGGCGCC
GCCAACATCG GCTGGATGGG CACCGCGATG CTGTGCTACG TCACGCCGAA GGAGCACCTG
GGCCTGCCGG ACAAGGAAGA CGTGCGCGAG GGCATCATCA CGTACAAGAT CGCCGCGCAC
GCCGCCGACC TGGCCAAGGG CTGGCCCGGC GCGCAGCTCC GCGACAACGC GCTGTCCAAG
GCGCGCTTCG AGTTCCGCTG GGAAGACCAG TTCAACCTCG GTCTCGATCC CGAGCGCGCG
CGTTCGTTCC ACGACGCCAC GCTGCCGGCC GAAGGCGCCA AGATCGCCCA CTTCTGCTCG
ATGTGCGGGC CGAAGTTCTG CTCGATGAAG ATCACGCAGG AAGTGCGCGA CTACGCGGCA
TCGCTGCCGG AAGCCGAACG CGGAATGCAG GAGAAGTCGA TTGAGTTCGT GAAGACGGGC
TCGAAGATCT ACTCGTAA
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| Protein sequence | MARTAPAASF ESLESDLDQK FAYPASSKTY ITGSRPDIRV PLRTILQTAT RTEKGEMANP
PIPVYDTSGP YSDPDVHIDL KAGLPPVRAK WIEERNDTEV LTGLSSEYGL ARANDPATAH
LRFAQLTNPR RAKAGANVSQ MHYARKGIIT PEMEYVALRE SLNLQALYDK PEYKALLRQH
PGNALGAALP LRPEDMTPEF VRREVAAGRA IIPANINHTE LEPMAIGRNF RVKINGNLGN
SAVTSSLAEE VEKMVWSIRW GADTIMDLST GKHIHETREW ILRNSPVPIG TVPIYQALDK
TGGIAEDLTW EMFRDTLIEQ AEQGVDYFTI HAGVLLRYVP MTADRVTGIV SRGGSIMAKW
CLAHHKENFL YTHFDEICEI MKAYDVSFSL GDGLRPGCIA DSNDDAQFGE LRTLGELTAK
AWEHDVQVMI EGPGHVPLQR IQANMDEELK HCYEAPFYTL GPLVTDIAPG YDHITSGIGA
ANIGWMGTAM LCYVTPKEHL GLPDKEDVRE GIITYKIAAH AADLAKGWPG AQLRDNALSK
ARFEFRWEDQ FNLGLDPERA RSFHDATLPA EGAKIAHFCS MCGPKFCSMK ITQEVRDYAA
SLPEAERGMQ EKSIEFVKTG SKIYS
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