Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_6305 |
Symbol | |
ID | 4036743 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007972 |
Strand | + |
Start bp | 159499 |
End bp | 161955 |
Gene Length | 2457 bp |
Protein Length | 818 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637975331 |
Product | Type IV secretory pathway VirB4-like protein |
Protein accession | YP_582114 |
Protein GI | 94152712 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAAGC TGAAACGACG GCCGCTGGCG GAAATCGCGC CGTGGCTCAC CTCGATTACT CCCGAGCTCA TCCTGAACAA GGACGGATCA CTGCTCGCTA ACTACGAATT CCGTGGTGTG GATGCCGATA GCGCGGACGC GAGCGACATC ACCTCCGCGC GAGACCAGCT CGACCAAGCG TGCCGCTCCT TTGACAACCG CATCACAGCT TGGTGGCGCC TGACGCACCG ACGTACCAAG GGATACGTCG ACGGCGAGTT CAGCAACGGA ACGGATGCAC GTCTCGACGC GCTCAACCGC GCCCACATGA CCACGGGCAG GTATTACCGC AATGCGCATT CGCTGAGCAT CGCCTATACC CCCGAGACGG GCGTGGCCAA GTTCTTCGAG AAGATTGGGC ATCACATGAC CGTGGGCGGT AAGCCGATTT TCGCCGCCCT GCTCGAAGCG ACCAAGGATA CGGTCCTTGC CCGCAGCGCG TTCGCCTTCG ACATGGAGAA AATCCGCTCC GACACGCGGC GCTTCGAAGC CATGCTGGAC GCATTTACCG GTGGGATTCC GCGCATCAAG CCAACGCGCC TTGCGATGCA GGACAGCTAC GCCGCGCTCC ACCAGGTCGC CAACCCCAGT GTGCCGAAGC GTCGCATCCG TTTCCCGGTA ACGATGCTCG ACACCCATCT GAGTGAGTCG GAAATTACGG TTGGCTCCGA GCGCCTTCTG TTCGAATCCG CACATGGCAA ACGCTATGCC GCTATCGTTG CCGTCAAGGA ATGGATGAGC TTCCAGGAAG CGGCGCTCGA CACTCTGCTG CAAGTCGACG CCGAGCTGGA TATCTGCATC ATGTACCGCT TTCTGGACAC CGCCCGGGCA ACGGCCTATA TCGAGAAGGT GCGCCGCTTC TACAAGATGG CGGCGGTCAA CCTCCGTTCG ATGGTCCAGC AATATATGTC GAAGGAGGAG AACGAGAATG ACGAGGGGCG GGAGGAACTC GCCAAGGAAG CGGGCAAGGC ACTAAAGCGA CTGACCGCTG AAGGCGTACA GCACGGATTC GCCAACATCT CCATAGTCGT CTACGCCGAC ACCGAGGCGG AATGCGAGGA TGCCGTCAGC GAGGTGGTAG GAACACTGAC GAACGCTGGC TTTGGCGCGA TTCGGGAGAA GACCAATCTG ATGGCGGCGT GGAACAGCAC GCTGCCCGGC CGCTGGGACC GCCAGCGACG CTTGCAGTTT GTCGAGACAC CCGCGGTTTC CGACATTGCT CCTGTACGGT CGGTGCTCGA GGGTCCGACG CGCAACGACT GGCTGTCGGA GAAGACAGGC ACGGAAGTGC CGCCACTCAC CTGCCTGCCC ACCCGTCATC GGACTGGCCA GCGCGTCGAT ATGCATCAAC CAGGCGGCAA TGGACACCTG TTTGTAATCG GGCCCATCGG CGCGGGGAAG TCAGTTTTCC TCAACTTCCT AGTGTCGCAG GCGGATCGGC ACAAGGCGCG TCGCATCCGT TTCGACAAAG ACCGCTCCAC GCGTATCCCC ACGCTGCTGA GCGGGGGGGC ATTCATCGAC GTAACCGGCA AGTTCCAGGC GAGCACACCG GTCAATCCGC TGTCTCTGCT CGCCGACCCG GGCAGCTTTA CCTACGTCAC CGAATGGCTA ACGCTGGCCC TCGAAGACGA CGATTTCTCC CTTTCTCCGC AACAGAGTCA GGACATGTTC GAGGCAGTGA AGCTGCTCGC GAGCTATCCC CGCGAGCGGT GGACCCTCAG TGCCCTCTCC ACGATGCTCC ATGCCGATCT GCGCGAGCGG CTTCAGATCT GGCTGGTGGG CGGGCAGTAC GGCCACTTCT TTGATCACGT CGAGGATGCG TTCGCAGTGA GCGACAACCT CTGCATCGAG TGCGGCGAAC TGTTCCAGAA GTTTCCTCGG GCGGCAGCTC TCTTCACCGA CTATGCGTTC TACCGGATTA GCCAGTCGAT GGACGGCATC CGCTACACCG TCATCGAAGT GGAGGAATGC GGCTTCTTCT TTCAGAACGA GCGCTTCTAT AAGCGTTTCG AAGACTGGAT CACCACCATC CGGAAGCTCA ACGGAGCCAT CTGGGCGGCG ACGCAGTCCC TGCGGCAAAT CGCGCGTGTG GCGAATTTTG AAATCCTCAA GGAAAACATC GCCAACTGGA TCTATCTGCC GAACAGCCAG GCAAAGACGA GCACGGACCT TTACGGAGAC ATGTTTGGCC TGACCAAAGA CCAGATCCAG ATGATCTCCG ATGCGGTACC GAACCGTGAC TACCTCTGGA TCACCAACGT CCAGACCCGC ATGCTCCAGA CCGCTTTCAA CGACGAGATG GTGGCGATGC TGCGCTCGGA CGGTGTGGCG CAATCCATCT GCGACACCCA TTACGCGTCG GGCGAGCCCG ACTGGCAAGA CCGCTACGTG CGCGAAATGC TCGCGCGCGC AGCCTAA
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Protein sequence | MLKLKRRPLA EIAPWLTSIT PELILNKDGS LLANYEFRGV DADSADASDI TSARDQLDQA CRSFDNRITA WWRLTHRRTK GYVDGEFSNG TDARLDALNR AHMTTGRYYR NAHSLSIAYT PETGVAKFFE KIGHHMTVGG KPIFAALLEA TKDTVLARSA FAFDMEKIRS DTRRFEAMLD AFTGGIPRIK PTRLAMQDSY AALHQVANPS VPKRRIRFPV TMLDTHLSES EITVGSERLL FESAHGKRYA AIVAVKEWMS FQEAALDTLL QVDAELDICI MYRFLDTARA TAYIEKVRRF YKMAAVNLRS MVQQYMSKEE NENDEGREEL AKEAGKALKR LTAEGVQHGF ANISIVVYAD TEAECEDAVS EVVGTLTNAG FGAIREKTNL MAAWNSTLPG RWDRQRRLQF VETPAVSDIA PVRSVLEGPT RNDWLSEKTG TEVPPLTCLP TRHRTGQRVD MHQPGGNGHL FVIGPIGAGK SVFLNFLVSQ ADRHKARRIR FDKDRSTRIP TLLSGGAFID VTGKFQASTP VNPLSLLADP GSFTYVTEWL TLALEDDDFS LSPQQSQDMF EAVKLLASYP RERWTLSALS TMLHADLRER LQIWLVGGQY GHFFDHVEDA FAVSDNLCIE CGELFQKFPR AAALFTDYAF YRISQSMDGI RYTVIEVEEC GFFFQNERFY KRFEDWITTI RKLNGAIWAA TQSLRQIARV ANFEILKENI ANWIYLPNSQ AKTSTDLYGD MFGLTKDQIQ MISDAVPNRD YLWITNVQTR MLQTAFNDEM VAMLRSDGVA QSICDTHYAS GEPDWQDRYV REMLARAA
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