| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6302 |
|---|
| Symbol | |
|---|
| ID | 4036740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007972 |
|---|
| Strand | + |
|---|
| Start bp | 157758 |
|---|
| End bp | 158807 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637975328 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_582111 |
|---|
| Protein GI | 94152709 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCCC CAGCGAACAA CCACCCTCTT TTGCAGCTCA CGCAGCTCGC CGACAGCGCA
GTCTCGATGT TCTTCGAGTC GCTGGCGCCA CTGCACGATG TCATCCATGC GTCGGACGTC
GCGGAAGTCA TGATCAACCG CCACGACAGT ATCTGGGTGG AGCGACGTGG GGTACTGACC
AAGCTCGATA TCGTCTTGGA CCCAATTAAG GTGGAAGGCG CCGTTCGCTC CCTCGCCTCT
TCCGTTGAAA AGTCCGCTGT GCGCGGAACC TCCCAGGGCA TCATCAATGC CGGCCACAAA
GGTCTGCGGA TCGCGGCGGT CATGCAGCCG ACCGCGATCG ACGGCCACGC ACTGAGCATT
CGTCGCCACC GCGAAACGAA CCTGACGCTG GAGGACTACG CCAAGGCGGG CGCGTTTTCA
TTGCGCAACG CGACCACGAA GGCTGAGGAG CCGATCTTCC TGGGCAACGA GGAAGACGAG
GCGTTGATGC GTGCGCTCGA GCAGTTGATC GTAAGGCGCA AGAACGTCAT CGTTGCGGGC
GGCACGTCGT CGGGCAAGAC CACTTTCCTT AACGCGCTCG CCGGCCGCGT CCCGGCCACC
GACCGAGTCC TCACCATCGA GGACACGATG GAACTCAAGC TGACGGTACC GAATCTGGTG
CGTCTGCTCT CGAACAAGGA CAAGGGCGTC ACTACGCAAC ACCTCGTCGC GCTCGCCTTG
CGTTTCCGAC CCGATCGCAT CTTCGTTGGC GAAGTTCGCT TTGGCGAGGC GTTCGACATG
TTGCAGGCGT TCAACACCGG CCACGACGGC GGCATGGCGT CCCTTCACGC CAGCAGCGCT
CGCTCGGCCC TATCTCGCCT GGAGAGCATG GCGCTTCTTG GGATTCCCCC CGGCTCGGGA
TGGAAGCTCG ACGACATGAG AAAGCTCATT GCCGATTGCA TTCACTACGT GGTGCACATG
AAGCGCACCG GTGAAATGCG TCACGTCTCG GAAATCATTG AGATCAAGGG TTTCAGCAAC
GGCGATTACG ACATCAACCG CGTTTTTTAA
|
|---|
| Protein sequence | MESPANNHPL LQLTQLADSA VSMFFESLAP LHDVIHASDV AEVMINRHDS IWVERRGVLT
KLDIVLDPIK VEGAVRSLAS SVEKSAVRGT SQGIINAGHK GLRIAAVMQP TAIDGHALSI
RRHRETNLTL EDYAKAGAFS LRNATTKAEE PIFLGNEEDE ALMRALEQLI VRRKNVIVAG
GTSSGKTTFL NALAGRVPAT DRVLTIEDTM ELKLTVPNLV RLLSNKDKGV TTQHLVALAL
RFRPDRIFVG EVRFGEAFDM LQAFNTGHDG GMASLHASSA RSALSRLESM ALLGIPPGSG
WKLDDMRKLI ADCIHYVVHM KRTGEMRHVS EIIEIKGFSN GDYDINRVF
|
|---|
| |