Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_6253 |
Symbol | |
ID | 4036691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007972 |
Strand | + |
Start bp | 99868 |
End bp | 101526 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637975279 |
Product | phage integrase |
Protein accession | YP_582062 |
Protein GI | 94152660 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAATCC GACGTCAAAA ACTTGATCGC AAAGCCAGCG CCCAGATTCA AGGCGGCCGG GTCATTGACC TGGCGCCCGG CTGGTCTTTC TCGCTCGTTT GCCCTCACCA GGGCGAGCAG CGGTTCGATT TTAAAGAGTA TCGTGCGCGC GGCCGCGAGA ATCTTGCAGC GCATATGCGC GACGCCGCCT GGAGTCTACG CAATGAGCTA GGCGCCTACA CCCTGACTTC CTATGTTAGC TTTCTGCGCC GCTTCTGGCT GTTTCTTGAC GACCTGTCCG CAAAGGGCGA GGATATTGTT GCTCTCAACC AGATTACGCG GTCGTTGATT GAACGGTATC TGGCGTGGAT GGAACGCCAG ATCATCGTCG CCACCCAAAA CCGTGGGCAG ATTTGGTCGA TAGGGACTCG GCGCACTGCC TACAAGGCCC TCAAGGCATT CCTCGTAGCA AGGCAAAAGC GGGTTCCCGA CGAGGTAAGC GATCAGCTGA CTTTTCCGCG CAACCCATTT CCCAACGCAA ACAGTCACTC CTCCAAGCGC CAGCCCTATT CGGACAGAGA GCAGAAGCGA CTTCTTGCGG CGCTGAATCA AGATTTGCGC ACCATCCACG AGGGCGTCGG AGCACCCCTC TCGGAATTGC AGGTGCTCGT CGTTCACCTG CTATTGTTTG CTCTTGCAAC GGGCATTAAT CAGCAGCCGT TGCTGGATCT CAAGCGGGAT AGTTTTCGAC CCCATCCCCT CCCAGACAGA GAATTGCTGG TCACGCTCAA ACGTCGAGGC TATTCCGTCC AGAACACGTC CGTCCGCGCG GCCGAGGCAC CAGTTGCTAC CGCAAATATG CAATCGGTCC CGTCCACGAT CGGCGAACAC TTCCGGTTTC TGTGCCAGTT CACTGAATCT GTCGCCGATG ACGCTGCACC GCGTGACCGC GAGTATGTGT TCCTGCGTCG CGGACTTCTC AACGAGCGCA AAGGCGTTGT ATCTCGACTG TCCGCGAGAG ATGCCAAGAA TGCCGTCGCG ATCTTCATGC GCCGGCACAA ATTGGAGGAT GATCGCGGCC AGCCTCTGCA GGTCAGAGTC GCGCGCTTAC GCCCGACGTT TGCTACGGAG TTATACCGCC GCACCCGTGA CTTGCGCCGC GTGCAACGGG CACTCGGGCA CGCGAGCGTC TCCACCACTG CCCGTCACTA CGTCGACTCA CCCATCGAGG CTGAGCGTGA TCATGCCTTT GTCCTCGATG GGATGGTCAG CAGCTTCACT AAGCAAGACG TTTCTGGCAA AGTCCTTATC GCTGCCGACG GGTTAATCCC CGCGGCGAAC ATAAAAGACC TCCTCTCGGG TGGATACAAC ACCGGCGTCG CGCGGTGTCG AAATCCATTT CGGGATGACG CGTCCGTTTG CAAGAAGTTC TTTACCTGCT TCGGCTGTCC AAATATGGTG GTCTTCGAAG ATGACCTGTG GCGGCTCTTC AGCTTCTACT ACCGCTTGAT CTCCGAACGG CCGAAGATCA ATGCCGCGCA CTGGCTGAAG ACCTACGCTC CGATTATCCG GCGCATTGAT ACCGATATCG CACCGCAGTT TCCGAAGGAC AAAGTCACTG AGGCGCGAGC GCGTGCCCAA CAAAATCCCC ATCCGACCTG GCGTGGTATC GCCCTATGA
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Protein sequence | MAIRRQKLDR KASAQIQGGR VIDLAPGWSF SLVCPHQGEQ RFDFKEYRAR GRENLAAHMR DAAWSLRNEL GAYTLTSYVS FLRRFWLFLD DLSAKGEDIV ALNQITRSLI ERYLAWMERQ IIVATQNRGQ IWSIGTRRTA YKALKAFLVA RQKRVPDEVS DQLTFPRNPF PNANSHSSKR QPYSDREQKR LLAALNQDLR TIHEGVGAPL SELQVLVVHL LLFALATGIN QQPLLDLKRD SFRPHPLPDR ELLVTLKRRG YSVQNTSVRA AEAPVATANM QSVPSTIGEH FRFLCQFTES VADDAAPRDR EYVFLRRGLL NERKGVVSRL SARDAKNAVA IFMRRHKLED DRGQPLQVRV ARLRPTFATE LYRRTRDLRR VQRALGHASV STTARHYVDS PIEAERDHAF VLDGMVSSFT KQDVSGKVLI AADGLIPAAN IKDLLSGGYN TGVARCRNPF RDDASVCKKF FTCFGCPNMV VFEDDLWRLF SFYYRLISER PKINAAHWLK TYAPIIRRID TDIAPQFPKD KVTEARARAQ QNPHPTWRGI AL
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