Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_6179 |
Symbol | tnpA |
ID | 4036441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007971 |
Strand | - |
Start bp | 122481 |
End bp | 125447 |
Gene Length | 2967 bp |
Protein Length | 988 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | |
Product | TnpA transposase Tn4380 mercury transposon Tn3 family |
Protein accession | YP_581988 |
Protein GI | 94152581 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.646837 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACGTC GTTCAATCCT GTCCGCCGCC GAGCGCGAAA GCCTGCTGGC GTTGCCGGAC ACCAAGGATG AGTTGATCCG TCACTACACG TTCAGCGAAA CCGACCTCTC CATCATCCGG CAGCGGCGCG GCCCGGCCAA CCGGCTGGGC TTCGCCGTGC AGCTCTGTTA CCTGCGCTTT CCTGGTGTCA TCCTGGGCGT CGATGAGCCG CCGTTTCCGC CCTTGTTGAA ACTGGTCGCC GACCAGCTCA AGGTCAGCGT CGAAAGCTGG GACGAATACG GGCAGCGGGA GCAGACCCGG CGCGAGCACC TGGTCGAACT GCAAACGGTG TTCGGCTTCC AGCCCTTTAC CATGGGCCAC TACCGGCAGG CCGTCCAGTT GCTGACCGAG ATGGCCTTGC AGACCGACAA GGGCATCGTG CTGGCCAGCA CCTTGATCGA GCACCTGCGG CAGCAGTCGG TCATTCTGCC TGCCCTCAAC GCCGTCGAGC GGGCGAGCGC CGAAGCAATC ACCCGCGCCA ACCGGCGCAT CTACGATGCC TTGGCCGAAC CGCTGTCGGA CGCGCATCGC CGCCGCCTCG ACGATCTGCT CAAGCGTCGG GACAACGGCA AAACGACCTG GCTGGCCTGG CTGCGCCAAT CGCCCGTCAA ACCGAATTCG CGGCACATGC TGGAACACAT CGAACGCCTC AAAGCGTGGC AGGCGCTCGA CCTGCCTTCT GGCATCGAGC GGTCGGTGCA CCAGAACCGC CTGCTCAAGA TCGCCCGTGA GGGTGGCCAG ATGACGCCCG CCGACCTGGC CAAGTTCGAG GCGCAGCGAC GCTATGCCAC CCTGGTGGCG CTTGCCATCG AGGGCATGGC CACCGTCACC GACGAAATCA TCGACCTGCA CGACCGCATC CTGGGCAAGC TGTTCAACGC CGCCAAGAAC AAGCATCAGC AGCAATTCCA GGCGTCCGGC AAGGCGATCA ACGCCAAGGT GCGGCTGTTC GGCCGCATCG GCCAGGCGCT GATCGAGGCC AAGCAGGCGG GCCGCGATCC GTTCGCCGCC ATCGAGGCCG TCATGTCCTG GGATGCCTTC GCCGAGAGCG TCACCGAAGC GCAGAAGCTT GCGCAGCCCG AGGACTTCGA TTTCCTGCAC CGCATCGGCG AAAGCTACGC CACGCTGCGC CGCTACGCGC CGGAATTCCT TGCCGTGCTC AAGCTGCGGG CCGCTCCCGC CGCGAAGGAC GTGCTCGACG CCATCGAGGT GCTGCGCGGC ATGAACAGCG ACAACGCCCG CAAGGTGCCC GCCGACGCGC CGACCGAGTT CATCAAGCCG CGCTGGCAGA AGCTGGTCAT GACCGACACC GGCATCGACC GGCGCTACTA CGAACTGTGC GCGCTGTCGG AGATGAAGAA CGCGTTGCGT TCCGGCGACA TCTGGGTGCA GGGGTCGCGC CAGTTCAAGG ACTTCGAGGA CTACCTGGTG CCGCCCGCGA AATTCGCCAG CCTCAAGCAG GCCAGCGAAT TGCCGCTGGC CGTGGCCACC GACTGCAACC GGTACCTGAA CGACCGGCTG ACGCTGCTGG AAACACAGCT TGCCACCGTC AACCGTATGG CGACGGCCAA CGAGCTGCCG GACGCCATCA TCACCGAGTC AGGCTTGAAG ATCACGCCGC TCGACGCGGC GGTACCCGAC ACCGCCCAAG CGCTGATCGA CCAGACGGCA ATGATCCTGC CGCACGTCAA GATCACCGAA CTGCTGCTGG AGGTGGACGA ATGGACGGGC TTCACTCGGC ATTTCGCGCA TCTGAAATCG GGCGACCCGG CCAAAGACAA GAACCTGTTG CTGACCACGA TCCTCGCCGA CGCGATCAAC CTGGGCCTGA CCAAGATGGC GGAGTCTTGC CCCGGCACGA CCTACGCCAA GCTGGCTTGG CTGCAAGCCT GGCACATCCG CGACGAAACC TACGGGGCGG CGCTGGCCGA TCTGGTCAAC GCACAGTTCC GCCATCCCTT CGCCGAGCAC TGGGGCGACG GCACCACCTC ATCGTCGGAC GGCCAGAACT TCCGCACCGG CAGCAAGGCC GAGAGCACCG GCCACATCAA CCCGAAATAC GGGAGCAGCC CAGGGCGGAC GTTCTACACC CACATTTCTG ACCAGTACGC GCCATTTCAC ACCAAGGTCG TGAACGTCGG CGTGCGCGAT TCGACCTACG TGCTCGACGG CCTGCTGTAC CACGAGTCCG ACTTGCGGAT CGAGGAGCAT TACACCGACA CGGCGGGCTT CACCGATCAC GTCTTCGCCC TGATGCACCT CCTGGGCTTC CGCTTCGCGC CGCGCATCCG CGACCTGGGC GACACCAAGC TCTACATCCC GAAGGGCGAC GCCGCCTATG ACGCGCTGAA ACCCATGATC GGCGGCACGC TCAACATCAA GCACGTCCGC GCCCATTGGG ACGAAATCCT GCGGCTGGCC ACCTCGATCA AGCAGGGCAC GGTGACGGCC TCCCTGATGC TCCGAAAGCT CGGCAGCTAC CCACGCCAGA ACGGCCTGGC CGTGGCGCTC CGCGAGCTGG GCCGCATCGA GCGCACGCTG TTCATCCTGG ACTGGCTGCA AAGCGTGGAA CTGCGCCGCC GCGTGCATGC CGGCCTGAAC AAGGGCGAGG CGCGCAATGC GCTGGCCAGG GCAGTGTTTT TCAACCGCCT GGGTGAAATC CGCGACCGCA GTTTCGAGCA GCAGCGCTAC CGGGCTAGCG GCCTCAATCT GGTAACGGCT GCCGTCGTGT TGTGGAACAC GGTCTATCTG GAACGGGCTG CGCACGCGCT GCGTGGCAAC GGCCATGCCG TTGATGACGC GCTGTTGCAG TACCTGTCGC CGCTCGGTTG GGAGCACATC AACCTCACCG GCGATTACCT CTGGCGCAGC AGCGCCAAGA TCGGCGCGGG CAAGTTCAGG CCGCTACGAC CGCTGCAACC GGCTTAG
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Protein sequence | MPRRSILSAA ERESLLALPD TKDELIRHYT FSETDLSIIR QRRGPANRLG FAVQLCYLRF PGVILGVDEP PFPPLLKLVA DQLKVSVESW DEYGQREQTR REHLVELQTV FGFQPFTMGH YRQAVQLLTE MALQTDKGIV LASTLIEHLR QQSVILPALN AVERASAEAI TRANRRIYDA LAEPLSDAHR RRLDDLLKRR DNGKTTWLAW LRQSPVKPNS RHMLEHIERL KAWQALDLPS GIERSVHQNR LLKIAREGGQ MTPADLAKFE AQRRYATLVA LAIEGMATVT DEIIDLHDRI LGKLFNAAKN KHQQQFQASG KAINAKVRLF GRIGQALIEA KQAGRDPFAA IEAVMSWDAF AESVTEAQKL AQPEDFDFLH RIGESYATLR RYAPEFLAVL KLRAAPAAKD VLDAIEVLRG MNSDNARKVP ADAPTEFIKP RWQKLVMTDT GIDRRYYELC ALSEMKNALR SGDIWVQGSR QFKDFEDYLV PPAKFASLKQ ASELPLAVAT DCNRYLNDRL TLLETQLATV NRMATANELP DAIITESGLK ITPLDAAVPD TAQALIDQTA MILPHVKITE LLLEVDEWTG FTRHFAHLKS GDPAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHIRDET YGAALADLVN AQFRHPFAEH WGDGTTSSSD GQNFRTGSKA ESTGHINPKY GSSPGRTFYT HISDQYAPFH TKVVNVGVRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHLLGF RFAPRIRDLG DTKLYIPKGD AAYDALKPMI GGTLNIKHVR AHWDEILRLA TSIKQGTVTA SLMLRKLGSY PRQNGLAVAL RELGRIERTL FILDWLQSVE LRRRVHAGLN KGEARNALAR AVFFNRLGEI RDRSFEQQRY RASGLNLVTA AVVLWNTVYL ERAAHALRGN GHAVDDALLQ YLSPLGWEHI NLTGDYLWRS SAKIGAGKFR PLRPLQPA
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