| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6145 |
|---|
| Symbol | nccA |
|---|
| ID | 4036445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007971 |
|---|
| Strand | + |
|---|
| Start bp | 151729 |
|---|
| End bp | 154959 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | proton antiporter cation efflux protein NccA |
|---|
| Protein accession | YP_581954 |
|---|
| Protein GI | 94152547 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGCA ATGTCCTCAG TGGATCGATT CACTACCGAT GGCTTGTTCT GTTCCTGACG
GTCGTGATTG CCGCAATCGG CGCCTGGCAG CTCAAGCTGC TGCCGATCGA TGTCACGCCC
GATATCACGA ACAAGCAGGT GCAGATCAAC ACGGTGGTGC CAACCCTAAG CCCCGTGGAG
GTCGAGAAGC GCGTGACGTA TCCGATCGAA ACCGCTATTT CAGGGTTGAA CGGCGTCGAG
AACACGCGGT CGATGTCCCG CAACGGGTTC AGCCAGGTCA CCGTCATCTT CAAGGAGAGC
GCCAACCTCT ACTTCATGCG CCAGCAGGTA TCGGAGCGAC TCGTGCAGGC ACGTCCCAGC
CTGCCCGCAG GCGCCGAGCC GCAGATGGGT CCGGTTTCCA CTGGTCTGGG CGAGGTATTC
CACTACAGCG TGGAGTATCA ATACCCTGAT GGCAAGGGCG CACCGCTCAA GGACGGGGCG
CCGGGCTGGC AACGCGATGG AAGTTTCTTG ACCGAGCGCG GGGAACGGCT TGATGACCGT
GTGTCGAAGC TTGCATACCT GCGAACCGTG CAGGACTGGA TCATTCGCCC TCAGTTGAGG
ACAACGGCTG GTGTGGCCGA CGTGGATTCC TTGGGTGGCT ATGTCAAGCA GTTCGTGGTC
GAGCCTGATG CTGCAAAAAT GGCCGCCTAC GGCATCTCAT ATGGCGACCT CGCACAGGCT
CTGGAGGATG CCAATCTTTC GGTGGGTGCG AACTTCATGC GCCGTTCGGG TGAATCGTAC
CTGGTGCGTG CCGATGCGCG CATCAAGTCG GCGGACGAGA TCTCGCGCGC CGTGATCGCC
CATCGCCAGA ACGTGCCGAT CACGGTCGGC CAGGTGGCGT CCGTCAAGAT TGGCGGAGAA
CTTCGCTCCG GTGCGGCCAG CCGCAATGGC CAGGAAACGG TGATAGGCAG CGCGCTGATG
CTGGTTGGCG CGAACAGCCG TACCGTGGCG CAGGATGTTG GCGACAAGCT GGAACAAATC
TCGAAGACGC TGCCGCCGGG TGTAGTCATC GTTCCTACGC TTAACCGATC GCAACTGGTG
ACCGCCACCA TCGAGACAGT CGCCAAGAAT CTGGTGGAAG GCGCCTTGCT GGTGGTGGTA
ATCCTGTTCC TGCTGCTGGG CAACTGGCGC GCTGCCGTCA TTGCAGCGCT GGTCATCCCA
TTGTCGATGC TGGTCAGTGC TATCGGCATG AATCAGCTTG GGATCTCCGG CAACCTGATG
AGTCTGGGTG CGCTGGACTT CGGCCTGATC ATCGATGGTG CGGTGATCAT CGTCGAGAAT
ACCCTGCGGC GATTGGCGCA GCGTCAGCAT CAGGAAGGTC GTCTACTGAC GCTGAGGGAA
CGCCTGGACG AAGTGTTGCT GTCGTCACGG GAAATGCTTC GCCCCACGAT CTATGGGCAA
CTCGTGATCT TCCTGGTATT CCTGCCGTGC CTGACATTCC AGGGCGTGGA GGGAAAAATG
TTCTCGCCGA TGGTGATGAC GCTCATGCTG GCGCTGGCGT CCGCATTCGT GCTGTCCCTG
ACCTTCGTGC CTGCGATGCT GGCTGTGCTG CTACGCAAGG AAGTTTCCGA AAAGGAAGTA
CGGGTGATCG TCGCGACCAA GCAGTGGTAC CGCCCGTGGC TGGAGCGGGC GGTGGCGCGA
CCGATTCCGT TTGTCGGCGC CGGCTTGCTG GTGCTGGCAC TGGCTGCAGT TGCGTTCGCC
TTTGTCGGTC GCGAGTTCAT GCCAACGCTT GACGAACAGA ACCTTAACCT GTCCTCCGTT
CGCATTCCAT CGACATCGAT CGATCAGTCG GTGGCGATTG ATTTGCCGCT GGAACGCGCC
GTGCTCTCGC TCCCTGAGGT GAAGACTGTG TACTCCAAGG CGGGTACCGC CAGCCTGGCG
GCTGACCCCA TGCCGCCCAA CGCCTCCGAC AACTACATCA TCCTCAAGCC GAAGAGTGAA
TGGCCGGATG GCGTAACCAC CAAGGAACAG GTGATCGAGC GTATCCGGGA GAAGACGGCA
CCGATGGTGG GCAACAATTA CGACGTCACC CAACCCATTG AGATGCGCTT CAATGAACTG
ATCGGTGGCG TGCGCAGCGA TGTCGCCGTA AAGATCTATG GCGAGAATCT CGACGACCTG
ACCGCCACTG GGCAACGCAT TGCCGCCGTC TTGCGCAAGA CACCCGGAGC AACGGATGTG
CGCGTACCGC TGACCAGCGG GTTTCCCACC TTCGACATCG TATTCGATCG CGCCGCTATC
GCGCGGTATG GGCTGACGGT GAAGGAAGTG GCCGATACCG TCTCGGCAGC GATGGCGGGC
CGCCCGGCAG GCCAGATATT CGATGGCGAT CGGCGCTACG ATATTGTCAT CCGCCTGCCA
GGCAATCAGC GGGAGAACCT CGATGTGCTT GGCGCGCTGC CCGTGATGCT GCCAGCCGCC
TCGGACCAGG CGCGGGTTTC CGTGCCATTG CGGCAGCTTG TCGAGTTCCG ATTCACACAG
GGCCTGAACG AAGTGAGCCG CGACAACGGC AAGCGTCGCG TGTACGTGGA AGCCAATGTG
GGCGGGCGTG ACCTCGGCAG CTTTGTAGAC GATGCTGCTG CGCGGATCGC GCGGGACGTC
AAGTTGCCTC CCGGCATGTA CATCGAATGG GGCGGCCAGT TCCAGAACCT GCAAGCCGCG
ACCAAGCGAC TCGCCATGAT TGTGCCCGCC TGCTTCGTGC TGATCGCCGC GGCGCTGTAT
ATGGCGATCG GCAATGCAAT GCTGACCGCG ACAGTTCTGA CGGCTGTGCC CCTGGCGCTG
GCGGGAGGCG TGTTCGCACT ACTGCTGCGC GGCATCCCGT TCTCCATCTC CGCAGCAGTG
GGTTTCATTG CTGTCTCGGG CGTGGCCGTT CTCAATGGTC TCGTCCTGAT ATCGGCCATC
CGCAAACGGC TGGAAGACGG GGTGGCGCCG GACGCGGCCG TGATCGATGG CGCGATGGAA
CGGGTGCGAC CGGTGCTCAT GACTGCCTTG GTGGCATCTC TGGGCTTCGT GCCCATGGCC
CTCGCAACGG GGACGGGTGC GGAGGTGCAA AAGCCACTGG CAACGGTCGT GATCGGTGGA
TTGATCACGG CCACCGTGCT CACGCTCTTC GTGTTGCCCG CGATATGCGG CATGGTGGTG
CGCCGGAAAC GGGGCGCGGG CGTGGGTCGC GACGAACTCG CTGAAGCTTA G
|
|---|
| Protein sequence | MIGNVLSGSI HYRWLVLFLT VVIAAIGAWQ LKLLPIDVTP DITNKQVQIN TVVPTLSPVE
VEKRVTYPIE TAISGLNGVE NTRSMSRNGF SQVTVIFKES ANLYFMRQQV SERLVQARPS
LPAGAEPQMG PVSTGLGEVF HYSVEYQYPD GKGAPLKDGA PGWQRDGSFL TERGERLDDR
VSKLAYLRTV QDWIIRPQLR TTAGVADVDS LGGYVKQFVV EPDAAKMAAY GISYGDLAQA
LEDANLSVGA NFMRRSGESY LVRADARIKS ADEISRAVIA HRQNVPITVG QVASVKIGGE
LRSGAASRNG QETVIGSALM LVGANSRTVA QDVGDKLEQI SKTLPPGVVI VPTLNRSQLV
TATIETVAKN LVEGALLVVV ILFLLLGNWR AAVIAALVIP LSMLVSAIGM NQLGISGNLM
SLGALDFGLI IDGAVIIVEN TLRRLAQRQH QEGRLLTLRE RLDEVLLSSR EMLRPTIYGQ
LVIFLVFLPC LTFQGVEGKM FSPMVMTLML ALASAFVLSL TFVPAMLAVL LRKEVSEKEV
RVIVATKQWY RPWLERAVAR PIPFVGAGLL VLALAAVAFA FVGREFMPTL DEQNLNLSSV
RIPSTSIDQS VAIDLPLERA VLSLPEVKTV YSKAGTASLA ADPMPPNASD NYIILKPKSE
WPDGVTTKEQ VIERIREKTA PMVGNNYDVT QPIEMRFNEL IGGVRSDVAV KIYGENLDDL
TATGQRIAAV LRKTPGATDV RVPLTSGFPT FDIVFDRAAI ARYGLTVKEV ADTVSAAMAG
RPAGQIFDGD RRYDIVIRLP GNQRENLDVL GALPVMLPAA SDQARVSVPL RQLVEFRFTQ
GLNEVSRDNG KRRVYVEANV GGRDLGSFVD DAAARIARDV KLPPGMYIEW GGQFQNLQAA
TKRLAMIVPA CFVLIAAALY MAIGNAMLTA TVLTAVPLAL AGGVFALLLR GIPFSISAAV
GFIAVSGVAV LNGLVLISAI RKRLEDGVAP DAAVIDGAME RVRPVLMTAL VASLGFVPMA
LATGTGAEVQ KPLATVVIGG LITATVLTLF VLPAICGMVV RRKRGAGVGR DELAEA
|
|---|
| |