| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5962 |
|---|
| Symbol | gtrM3 |
|---|
| ID | 4036419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007971 |
|---|
| Strand | + |
|---|
| Start bp | 98192 |
|---|
| End bp | 99877 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | family 39 glycosyltransferase |
|---|
| Protein accession | YP_581771 |
|---|
| Protein GI | 94152364 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00513205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCTGC TCTCAAAACG ACGGATTTTG CCTGTCTTGA CGATGACACT GGCAATGGTC
CTTTGGATGT CGACACTAGC CATTCGCCCG CTGTATGAAC CCGATGAGGG GCGTTACGCA
GAGGTTCCGC GGGAAATGTT CGTCTCGGGC GACTGGGTCA CGCCGCGGTT AAATGGCGTC
AAGTTCTTCG ACAAGCCACC CCTTCAGTAT TGGGCGACCG CCGGCGCCTA TACGCTTTTC
GGGCCGTCCG AATGGACAGC AAGGATCTGG AGTGCTCTTG TGGGACTGCT GGGCGTACTT
GTCGCATGGT GGGCTGCGCA AAAGCTCTAT GACAAGCACG TTGGCCTGGC TTCAGCGTCG
GTACTTATCG GCGCACCCTT ATGGATTCTC GGCTCGAATC TGACAACGAC GGACATCGGC
GTCGGCTCAC TGCTCGGCAG TGCGGCTCTC GTTTTCGCTG TGGCTTACCA GCGTCGGGAC
TATCGCTTAT ACCCGATTAT CTGGCTGTTG GTCGGTCTGG CATTTCTTGC CAAAGGCCTG
ATCGCTCTCG TATTGCCAGC AATAACGCTG GCGCTGTACG TGGCGATCAC GCGACAGCGA
TCCGCGTTCT TCAGCGGGAA ATTCTGGCGC TGGAGTCCGC TTGCGGTGGC AATCACAGCG
CCTTGGTTCA TTGTGGTGTC CTTGCGCAAC CCCGAATTTC TGAACTACTT CTTTATCCAC
GAACACTTCG CAAGGTTTTC TTCCGCGATA CACGAGCGAG ACAAGCCAGT CTGGTTTTTC
CTTGCCGTTG CCGCGGCGGG TGTGCTGCCG TTCATTGGCT TGATCCCTCG TGCTTTCTCT
TTCTGGTCTC GCAGCGCTCG GGCGACGCAG CACTTCGATT CGAGATTGTT TTTGTCACTC
TGGGTTGTTG TTGTCCTTAC CTTCTTCTCG ATCTCCCGCT CCAAGCTGCC GCTGTATATC
CTGCCAGCCT TTCCACCGAT GGCGGTGCTG CTTGCGCACC GTGCTATGTC CGGAGTCCGC
CCCACGTTGG CTGCAAGCTT TCTTGCCATG CCAGTGCTCG CGGTGACGAT CGGCTTCCTG
CTGTGGCATC CGACCTTGTC AAATGCGCTA CTGAAGCGCG ACGTCAGCGA TCCGGCAACG
TTGCAGACCT GGGGCTCCAT CACCGTAGGC ATTCTCGCGA TCGGTGGCTT TCTGGCCTTT
GGGATCGCCC TGCGCGGCCG CAGGCTCTGC GCGGTTGCCG TCGCTTCGCT GGCGACGCTG
GCCGGCCTTC AGGCTGGCTT GATGGCGTCT CGGGCGTTTG GATCCCTCTC CATCAAACCA
CTTGGCTTGG AAGCCAAGGC GGCGTCCCGC GTTGACACAG AACTGTTCGA CGTGGGACAA
ATTGACCGAG GCCTAGCATT CTACACCGAG CGATTACCTA CCATTGTCGG CGCCAGATCC
GAGCTAGATC TTGGCTTCTC GGTCGAGCCT GGAAAGTGGA TTGCTAATGA AGAGGCCTTT
GCGCAGCGAT GGAAGACCCC TGGTCACAAG CTCGCGGTCA TGCGGCACGA GACGTTCGTC
GTGATCATCG CCCCATGCTG GCATGCCGGT CATCTTCAAG CCGTGTTTGA TCACTACAAA
GGCGTGCTTG GGATCGACCC TGCTCTGATC CAGACGCGGC GGCGAGGGAT AAAGTCCACG
CGCTAA
|
|---|
| Protein sequence | MGLLSKRRIL PVLTMTLAMV LWMSTLAIRP LYEPDEGRYA EVPREMFVSG DWVTPRLNGV
KFFDKPPLQY WATAGAYTLF GPSEWTARIW SALVGLLGVL VAWWAAQKLY DKHVGLASAS
VLIGAPLWIL GSNLTTTDIG VGSLLGSAAL VFAVAYQRRD YRLYPIIWLL VGLAFLAKGL
IALVLPAITL ALYVAITRQR SAFFSGKFWR WSPLAVAITA PWFIVVSLRN PEFLNYFFIH
EHFARFSSAI HERDKPVWFF LAVAAAGVLP FIGLIPRAFS FWSRSARATQ HFDSRLFLSL
WVVVVLTFFS ISRSKLPLYI LPAFPPMAVL LAHRAMSGVR PTLAASFLAM PVLAVTIGFL
LWHPTLSNAL LKRDVSDPAT LQTWGSITVG ILAIGGFLAF GIALRGRRLC AVAVASLATL
AGLQAGLMAS RAFGSLSIKP LGLEAKAASR VDTELFDVGQ IDRGLAFYTE RLPTIVGARS
ELDLGFSVEP GKWIANEEAF AQRWKTPGHK LAVMRHETFV VIIAPCWHAG HLQAVFDHYK
GVLGIDPALI QTRRRGIKST R
|
|---|
| |