| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_2420 |
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| Symbol | |
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| ID | 4035901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | + |
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| Start bp | 2990944 |
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| End bp | 2993256 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637974912 |
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| Product | ribonuclease R |
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| Protein accession | YP_581681 |
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| Protein GI | 93007244 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.173356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTGGA ATGATCCAAA CGCCTCAAGT GAGGCACAAA AATATGATAA CCCGATTCCT
AGTCGCGAGC TTATATTAAG CACGATTAAT GAACACGGTG AAATCACCCA TCAGCAATTG
GCAAAAGCCT TTAATATTGC TGATCCCGAT CAGTTTGACG CTTTAGGCAA CCGCCTAAAA
GCGATGACAC GCGATGGACA AGTCAATCGT GACGGTCGCC CTTATCGCTA TCGTACGGTC
ACTCAGCACG ACATCGTCAC CGGTACAGTA ACAGCCCATC CAAAGGGCTT TGGCTTTGTA
TTATTAAGTG ATATGCCTGA CCTATTCTTG CATGAAAAAC AAATGCGTTG GGTCTTTAAT
GGCGATACAG TAGAAGCCGT TGGCACGTCA ACAGACAACC GCGGTCGTAC TGAAGGTCGT
ATCGTTGATG TCGTTGAGCG TCGTCAAAAT CATTTTATCG GTACGCTGGC TCATGATGAA
GACGGTTACT GCGTTGAGCT TGGTAGCCCA AATAACCATC AGCCGATTAC CGTTACAGAA
GACAATGTAC AGGCTTTCAA TGCTAAGCAA GGCTCGCCGG TAAAAGTTGA TATTATTGAT
TGGCCAAATC AGCATGAATT TGCCACGGGC AAAATCACTG AAGTCTTATC TGATGACAAT
GATCGCGAAC TGATCATTGA GACTACGTTA CTTAATTATG ATATTCCATC AGAGTTCAGT
GAAGCGGCGC TCAATCAAGC AAATGATTAT AAAGAGCCGA CTGAAAAAGA TCTAAAAGGT
CGTGTCGACT TACGTGAGTT GCCATTAGTG ACGATCGATG GTGAAGATGC TCGTGACTTT
GATGATGCTG TGTTTGCAGA AAAGCGTTCT GGTGGTAATT ATCGCGTCTT GGTAGCGATT
GCGGATGTCA GTTATTATGT GACACCGAAC TCGCCACTTG ATCAAAATGC CTACGAGCGT
GGTACGTCAG TATATTTCCC GCATCAAGTG ATTCCTATGT TGCCTGAAGT ACTGTCTAAT
GGTCTCTGTT CGCTGAACCC TAATCTTGAT CGCCTCTGTA TGGTTGCTGA TATTAAGATA
TCACGTGCTG GTAAAATCAC CAGTTATGAG TTTTATCCTG GCGTCATGCA CTCGCAAGCG
CGCTTGACTT ACAATCAAGT GAACGCTTAT CTTGAGAATC CAAAAGACAG TAGCGTTCCA
AAATCGTTGA CAGAAAATAA AGAGGTCAAA AAATCTGTCG ATACCTTACA TCAACTGTAT
GAGCTACTCC TCAAAAAGCG TGAAGAGCGT CATGCGATGG AGTTTGAGAC CGTTGAAACT
TATATTAAGT TCAATGAAAA AGGTGGTATC GAAGCCATCT TGCCTCGTAC GCGCGGTGAT
GCGCAAAAGC TTATCGAAGA GTGCATGTTG CTTGCCAATA CCTGTGCAGC AAACTTTGCG
CTAAAAAATG AGCTGCCTGT GTTATATCGT AATCATGATA AGCCTGATGG CGAAAAGTCG
ATGCGTATCC ATGAATATGC CAAAAACTTT GGTCTAAGCT TCCCAGAAGA AAATCCTACT
CAAGCAGATT ATCAGCGTAT CATTGAAGCA ACTAAAGAGC GACCGGATGC GATTAGCATT
CATAGCATGC TGCTTCGTTC GATGATGCAA GCGAACTATT CACCTGACAA TATCGGTCAC
TTTGGTTTGG CTTACGATGA GTATAGTCAT TTTACCTCGC CGATTCGTCG TTATCCTGAC
TTAATGTTGC ATCGTGCGAT CAAGGCGAAA GTGACAAATG CCAAACAGCC TGTGATGGAT
TTTTCATTAG AAGGTGCTGG CATGCAAACC TCAGATACTG AGCGCCGTGC TGAAAAGGCT
TCACGCTACG TAGAATCATG GCTCAAATGT CATTATATGA AAGATCATGT CGGCGAAGAG
TTCGATGGTG TCGTAACTAC CGTCACAAAC TTTGGTTTAT TTATTACTCT GACGGATTTG
TATATCGATG GTTTGGTGCA TATCTCAAAC GTTGGTGACG ATTTCTTTGT TTATGATGAG
CAGCAGCAAC AGCTTATCGG TAAAGATAGA GGCACAGTGT TTGGGCTGGG CGATTTGGTT
AAAGTTAAAG TAGCTGGCGT TAATATGGAT CTGCTACAAA TTGACTTTGG TTTACAAGCA
AAGCTGCAAT CTAGTAAAAT GAATCAAACT AAGAAAGATC ATTCAAACTC TAGTCAGCCA
AACCGCAGCT CCACAAGCAA AGATCAGCCA AAGAAATCAC CTGCGAAGAG AAGCGGCAGT
CGTGGTGGTA GAGGCAGTAG TAAAAAGAGC TAA
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| Protein sequence | MSWNDPNASS EAQKYDNPIP SRELILSTIN EHGEITHQQL AKAFNIADPD QFDALGNRLK
AMTRDGQVNR DGRPYRYRTV TQHDIVTGTV TAHPKGFGFV LLSDMPDLFL HEKQMRWVFN
GDTVEAVGTS TDNRGRTEGR IVDVVERRQN HFIGTLAHDE DGYCVELGSP NNHQPITVTE
DNVQAFNAKQ GSPVKVDIID WPNQHEFATG KITEVLSDDN DRELIIETTL LNYDIPSEFS
EAALNQANDY KEPTEKDLKG RVDLRELPLV TIDGEDARDF DDAVFAEKRS GGNYRVLVAI
ADVSYYVTPN SPLDQNAYER GTSVYFPHQV IPMLPEVLSN GLCSLNPNLD RLCMVADIKI
SRAGKITSYE FYPGVMHSQA RLTYNQVNAY LENPKDSSVP KSLTENKEVK KSVDTLHQLY
ELLLKKREER HAMEFETVET YIKFNEKGGI EAILPRTRGD AQKLIEECML LANTCAANFA
LKNELPVLYR NHDKPDGEKS MRIHEYAKNF GLSFPEENPT QADYQRIIEA TKERPDAISI
HSMLLRSMMQ ANYSPDNIGH FGLAYDEYSH FTSPIRRYPD LMLHRAIKAK VTNAKQPVMD
FSLEGAGMQT SDTERRAEKA SRYVESWLKC HYMKDHVGEE FDGVVTTVTN FGLFITLTDL
YIDGLVHISN VGDDFFVYDE QQQQLIGKDR GTVFGLGDLV KVKVAGVNMD LLQIDFGLQA
KLQSSKMNQT KKDHSNSSQP NRSSTSKDQP KKSPAKRSGS RGGRGSSKKS
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