| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_2259 |
|---|
| Symbol | |
|---|
| ID | 4034994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | - |
|---|
| Start bp | 2770787 |
|---|
| End bp | 2772076 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637974733 |
|---|
| Product | TRAP dicarboxylate transporter- DctM subunit |
|---|
| Protein accession | YP_581520 |
|---|
| Protein GI | 93007083 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.105706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0552322 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCCAG AAATTATTGG TGCCATTGGT TTGTTATGTA TGATTGCGAT GGTCATGCTG
CGTGTTCCTG TTGCACTTGC GATGCTTGGT GTTGGTTTGG TTGGCTTTGG TGCCGTGACA
GCACCGATTG GTGCGGTGCA GATGCTCAAA GACTTACCCG TTGATGTTTT AGCGAAATAT
GATTTTAGTG CTATTCCATT GTTCATACTT ATGGGTGTCT TTGCTTCTCA TTCTGGTATG
GCAGGGAAGT TATTTGATGC TACTCGAACT ATCTTTGGTG GCGTTAGGGG TAGTCTAGGT
ATTGCTGGTA TTGGTTCATC GGGTATCTTT GCATCCATTT CAGGGTCATC ATTGGCGACA
GCGTCTACCA TGACCAAAGT AGCATTGCCA CAAATGGAGA AGTACGGTTA TCAGCCAGGC
TTTGCCTGCG GTATTTTAGC CGCTGGTGGT ACTTTGGGAA TCATGATTCC GCCCAGTATT
GCACTGCTGG TTTATGCCAT CCTAACCCAG CAGTCAGTTG GTGATATGTT TATCGCTGGC
TTCTTACCGG GTATGCTCGG CATGGTGATG TACTCAATCA CTGTTATGAT CATGGTACGC
TGGAAGCCAC ATTTAGCACA ACGTGGGGAG CCTACTTCTT GGAAACAAAA GCTAATCTCT
TTGACAGGTC TTATTCCCTT TAGCTTTATC TTCATCGTGA TTATCGCGGG TATTTTCTTT
GGGCTATTTA CCCCAACAGA AGGCGCTGCA GTTGGGGCGT TTGTCTCTTG GGCTTATGCT
TTTGCCAAAG GCATGCGAAT GATGGGGCTT AAGCAATCAT TAATTGAGAC GCTTGCCCTC
TCTGCGGTGG TCTTCTTTAT GTTACTTGGT GCTGAAGCAC TCGGCTACTT TATCTCAGTA
TCGCGCTTGT CTTATAGTTT GGCGACGTGG ATTGGTACAT TGGCAGTTAG CCCAATGATA
GTATTGATCT GCATTTTGAT TATGTACTTT CTGTTAGGCT TGTTCATGGA TGCCCTAGCG
ATGCTGGTGA TTACGATTCC GGTAGTGTTC CCAATCATTG TTGCGTTAGG TTATGATCCG
GTTTGGTTTG GTATTATTGC AGTATTAACC GTAGAGCTCG GACTCATTAC ACCGCCTATG
GGTATGAATA TCTTTGTGAT TAAGGCAATG GCACCACATA TTAAGCTGTC CGATATGTTC
AAGGGGGTGA TGCCTTTTAT TGTCTCTGAC TTGATTCGCT TAGTCATTTT GGTCGCGTTC
CCAGCGATAT CTTTAGTGCT ACTAAGTTAA
|
|---|
| Protein sequence | MSPEIIGAIG LLCMIAMVML RVPVALAMLG VGLVGFGAVT APIGAVQMLK DLPVDVLAKY
DFSAIPLFIL MGVFASHSGM AGKLFDATRT IFGGVRGSLG IAGIGSSGIF ASISGSSLAT
ASTMTKVALP QMEKYGYQPG FACGILAAGG TLGIMIPPSI ALLVYAILTQ QSVGDMFIAG
FLPGMLGMVM YSITVMIMVR WKPHLAQRGE PTSWKQKLIS LTGLIPFSFI FIVIIAGIFF
GLFTPTEGAA VGAFVSWAYA FAKGMRMMGL KQSLIETLAL SAVVFFMLLG AEALGYFISV
SRLSYSLATW IGTLAVSPMI VLICILIMYF LLGLFMDALA MLVITIPVVF PIIVALGYDP
VWFGIIAVLT VELGLITPPM GMNIFVIKAM APHIKLSDMF KGVMPFIVSD LIRLVILVAF
PAISLVLLS
|
|---|
| |