| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_2177 |
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| Symbol | rpoB |
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| ID | 4035513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | - |
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| Start bp | 2674873 |
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| End bp | 2678991 |
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| Gene Length | 4119 bp |
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| Protein Length | 1372 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637974650 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_581438 |
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| Protein GI | 93007001 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0502999 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATATT CTTATACTGA AAAAAAGCGT ATTCGCAAAA GTTTTGCTGA ATTGCCTACT
GTGATGGACA TTCCCTATTT GTTGTCTATC CAAGTAGATT CTTATGAGCA ATTTTTGCAA
GAGCATAAAA AGCCAAAAGC TCGTGAGAAT ACTGGCTTGC AAGCTGCATA CTCTTCTATT
TTCCCAATTG AGAGTCACTC TGGTAACGCA GAGCTACAAT TCGTTGAATA CTATTTAGGT
ACGCCTGAAT TTGATGAGCG TGAGTGTATC TTACGTGGTT CGACATTTGC TGCGCCTATG
CGTGTTAAAA TTCGCTTAAT CATCAAAGAC AAAGACAGCA AAGATAAAGA CAGCAAAGCG
GCTATTAAAG ATATCCGTGA GCAAAGCGTC TATATGGGCG AGATGCCACT TATGACTGCT
AACGGTACCT TTATTATTAA CGGTACTGAG CGTGTAATCG TATCTCAGCT ACATCGTTCA
CCTGGTGTGT TCTTTGACCA TGATAAAGGT AAGTCGCACT CAAGTGGTAA GGTGCTTTAT
AACGCGCGTA TCATTCCTTA CCGTGGTTCA TGGTTAGATT TTGAGTTCGA TGCTAAAGAC
TTGGTTTTTG CTCGTATTGA CCGTCGTCGT AAGTTATTGG CGTCTATTAT TTTACGCGCT
TTAGGCTTAA GCACTTCTGA GATCTTAGAT TTATTCTTTG ATAAAGTGCG AGTTTATAAA
GGCGAAGAGC AGTTCGAGAT TGATCTGGTT GCCGATCGCT TACGTGGCGA GATGGCACAG
TTCGATATCG TGACGCCTGC AGGTGACGTG GTTGTTGAGC AGGGCAAACG TATTAATGCT
CGCCGTATCC GTCAGCTTGA AGAAGCGGGT ATGACTAAAA TCTCGATTCC TGATGAATAC
TTATATGAGC GCATTTTAGC CGAAGACATC ATCGTTAATG ATGAAGTTAT TGCTCGTGCT
AACACGCTGA TTGACCATGA ATTATTGGTT AAATTAAGTG CGTTTGAAGC CAGTGAATCT
ATTAAAGAAT TTAGTATTCT GTTTACCAAC GATATCGACC AAGGTAGTTA CATTGCCGAT
ACGCTACGTG CTGATAGCAC GTCAAGCCGT GAAGAAGCTT TAATTGAAAT TTATAAAGTC
ATGCGCCCAG GTGAGCCACC AACGGTTGAA ACTGCTGAGA AACTTTTTGA CAGCATGTTC
TTTAACGCGG ATCGTTATGA CTTATCAAAT GTCGGTCGTA TGAAGTTTAA CCGTCGTTTA
GGTCTTGATT TTGTAGATAC CGATGACGCT GATATTCAGC GTGAACGTAG CGTATTGACC
AATGCCGATA TCGTTAACGT TCTAAAAGAG CTTATCGAGA TTCGTAATGG TCGCGGTGAA
GTCGATGATA TTGACCATTT AGGTAACCGT CGCATTCGTT CAGTAGGCGA GATGGCAGAA
AACCAATTTC GTGTTGGCCT AGTACGTGTT GAGCGTGCGG TTAAAGAGCG TTTAAGCTCA
GCAGAATCTG ATAACTTATC GCCACAAGAT TTGATTAACT CAAAACCTGT TGCTGCGGCG
GTCAAAGAAT TCTTTGGCTC GAGCCAGTTA TCGCAGTTTA TGGATCAGAA TAATCCATTG
TCTGAAGTCA CGCATAAACG CCGTGTGTCT GCATTAGGAC CCGGTGGTCT GACCCGTGAG
CGTGCAGGCT TTGAAGTACG TGACGTACAT GATACCCATT ATGGTCGCGT ATGTCCGATT
GAGACTCCTG AAGGTCCAAA CATTGGTTTG ATTAACTCAT TAGCGACTTT TGCTAAAACC
AACAGCTTTG GCTTTTTGGA AACACCTTAT CGCCGTGTAG TTGATGGTAA AGTAACGGAC
GTTATTGAAT ATCTGTCAGC GATTGAAGAA GTCGGTACGG TCATTGCACA GGCTGATTCA
CCAGTAACTG CCGATGGCGC GTTATCTGAT GAAATGGTTA GTGTCCGTAG CTATGGTGAA
TTCGTCCGTA TGCCGCCAGA AAAAGTGACG CATATGGATG TGTCGCCAAG TCAGGTTGTA
TCTGTAGCCG CTGGTCTGAT TCCATTCCTA GAGCATGATG ATGCTAACCG TGCCTTGATG
GGCTCAAACA TGCAGCGTCA GGCAGTTCCT ACGCTACGTG CTGATAAGCC ATTAGTAGGT
ACCGGTATGG AGCGTCACGT TGCTCGTGAT TCTGGTGTTT GTGTTATTGC TAAGCGTGGC
GGTGTAATCG AAGACGTTGA TGCCTCACGT GTTGTGGTTC GTGTAAATGA AGATGAGATG
ATTGCTGGTG AAGCCGGTAT AGATATCTAT AACTTAGTTA AATATACGCG TTCTAACCAA
AACACTTGTA TCAACCAACG TATTATTGTT AACCAAGGCG ATGCTATTGC TGTAGGCGAT
ATATTGGCCG ATGGTCCGTC GACGGATCTT GGTGAGTTGG CATTGGGTCA GAACATCCGC
ATCGCATTTA TGCCGTGGAA TGGTTACAAC TTCGAAGATT CAATCTTGCT GTCTGAAAAA
GTGGTTAAAG AAGATCGTTT CACTACTATT CATATCCAAG AATTGACTTG TGTGGCACGT
GATACCAAGC TTGGAACCGA AGAGATTACT GCGGATATTC CAAACGTTGG CGAAGCAGCT
CTATCAAGCC TTGATGAAGC GGGTATCGTT TATATCGGTG CTGAAGTTGA CGCTGGTGAT
ATCTTAGTTG GTAAAGTGAC GCCAAAAGGT GAAACACAAC TAACGCCAGA AGAGAAACTC
CTCCGGGCTA TCTTTGGTGA AAAAGCCGCT GATGTTAAAG ACACGTCTTT GCGTGTTCCA
ACATCAAGCA AAGGTACGGT TATTGACGTT CAAGTCTTTA CCCGTGACGG CGTTGAAAAA
GATGCACGTG CAAGAGCGAT TGAAAAATCA CAGCTTGATA GCTATCGTAA AGATTTAAAA
GAAGAGCTAC GTATCTTTGA AGAAGCGGCT CGTGGTCGTA TTGGTAACTT ATTAGATGGT
CAAAAAGTCA GCGGTGGTTC TGGTCTAAAA GCCGGTACAG TGATGGCATT GGCTGATATG
AAAGATATGA GCCTTGAGAC TTTGCTTGAT ATTCAGCCTG TTGAAGAAGA AATCTCTGAG
CGTCTAACGC AAATCGCTGA GTATTTGGTT GATAAGCAAA AAGATATCGA TGTGAAGTTT
GCTGAGAAAA AACGCAAACT AACCGCTGGT GATGACTTAC AACATGGCGT ACAAAAAATC
GTTAAGGTAT ATCTAGCGGT TAAGCGTCGT ATTCAGCCTG GTGATAAAAT GGCTGGTCGT
CATGGTAACA AAGGTGTTGT ATCGCGCATT ATGCCAGTCG AAGATATGCC TTATGATGAA
AATGGTAATA CCGTTGACAT CGTCTTGAAC CCGCTTGGTG TACCGTCTCG TATGAACATC
GGTCAGGTCC TAGAAACGCA TTTGGGTATG GCAGCGAAAG GCTTGGGCGA GAAGATCGAT
GGTATGCTCA AATCGCAAGC AGCGATCAAA GACTTACGTG ACTTCTTAGA TAAAATCTAT
AACCAAGTCG GCGGTGAGCA AGTTGATCTT GATAGCTTGA GTGATGATGA CATCATGGCG
CTAGCAGACA ACTTGCGTGC TGGTGTACCA ATGGGCACAG CAGTATTTGA CGGCGCAAGA
GAAAGCCAAG TTAAAGATCT GTTAGAGCTT GCTGGTATGG ATCGCGATGG TCAACAGACG
TTGTATGATG GTCGTACTGG TCAGAAGTTT GACCGCAAAG TAACGGTCGG TTATATGTAC
ATGCTCAAAC TTAACCATTT GGTTGACGAC AAAATGCATG CGCGTTCAAC TGGTTCTTAC
TCACTAGTGA CGCAGCAGCC ACTCGGTGGT AAAGCTCAGT TTGGTGGTCA GCGCTTCGGT
GAGATGGAAG TCTGGGCACT AGAAGCTTAC GGCGCGACAT ATACGCTACA AGAGATGCTG
ACTGTGAAGT CGGATGACGT TGAAGGCCGT ACGCGTATGT ACAAAAACAT CGTCGATGGT
GAGCAATATA TGGATCCAGG TATGCCTGAA TCGTTTAACG TATTGACCAA AGAAATCAAA
TCACTGGGTA TCAATATTGA GTTAAAACAA AGCAACTAA
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| Protein sequence | MAYSYTEKKR IRKSFAELPT VMDIPYLLSI QVDSYEQFLQ EHKKPKAREN TGLQAAYSSI
FPIESHSGNA ELQFVEYYLG TPEFDERECI LRGSTFAAPM RVKIRLIIKD KDSKDKDSKA
AIKDIREQSV YMGEMPLMTA NGTFIINGTE RVIVSQLHRS PGVFFDHDKG KSHSSGKVLY
NARIIPYRGS WLDFEFDAKD LVFARIDRRR KLLASIILRA LGLSTSEILD LFFDKVRVYK
GEEQFEIDLV ADRLRGEMAQ FDIVTPAGDV VVEQGKRINA RRIRQLEEAG MTKISIPDEY
LYERILAEDI IVNDEVIARA NTLIDHELLV KLSAFEASES IKEFSILFTN DIDQGSYIAD
TLRADSTSSR EEALIEIYKV MRPGEPPTVE TAEKLFDSMF FNADRYDLSN VGRMKFNRRL
GLDFVDTDDA DIQRERSVLT NADIVNVLKE LIEIRNGRGE VDDIDHLGNR RIRSVGEMAE
NQFRVGLVRV ERAVKERLSS AESDNLSPQD LINSKPVAAA VKEFFGSSQL SQFMDQNNPL
SEVTHKRRVS ALGPGGLTRE RAGFEVRDVH DTHYGRVCPI ETPEGPNIGL INSLATFAKT
NSFGFLETPY RRVVDGKVTD VIEYLSAIEE VGTVIAQADS PVTADGALSD EMVSVRSYGE
FVRMPPEKVT HMDVSPSQVV SVAAGLIPFL EHDDANRALM GSNMQRQAVP TLRADKPLVG
TGMERHVARD SGVCVIAKRG GVIEDVDASR VVVRVNEDEM IAGEAGIDIY NLVKYTRSNQ
NTCINQRIIV NQGDAIAVGD ILADGPSTDL GELALGQNIR IAFMPWNGYN FEDSILLSEK
VVKEDRFTTI HIQELTCVAR DTKLGTEEIT ADIPNVGEAA LSSLDEAGIV YIGAEVDAGD
ILVGKVTPKG ETQLTPEEKL LRAIFGEKAA DVKDTSLRVP TSSKGTVIDV QVFTRDGVEK
DARARAIEKS QLDSYRKDLK EELRIFEEAA RGRIGNLLDG QKVSGGSGLK AGTVMALADM
KDMSLETLLD IQPVEEEISE RLTQIAEYLV DKQKDIDVKF AEKKRKLTAG DDLQHGVQKI
VKVYLAVKRR IQPGDKMAGR HGNKGVVSRI MPVEDMPYDE NGNTVDIVLN PLGVPSRMNI
GQVLETHLGM AAKGLGEKID GMLKSQAAIK DLRDFLDKIY NQVGGEQVDL DSLSDDDIMA
LADNLRAGVP MGTAVFDGAR ESQVKDLLEL AGMDRDGQQT LYDGRTGQKF DRKVTVGYMY
MLKLNHLVDD KMHARSTGSY SLVTQQPLGG KAQFGGQRFG EMEVWALEAY GATYTLQEML
TVKSDDVEGR TRMYKNIVDG EQYMDPGMPE SFNVLTKEIK SLGINIELKQ SN
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