| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_2169 |
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| Symbol | |
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| ID | 4036000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | - |
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| Start bp | 2661288 |
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| End bp | 2663666 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637974642 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_581430 |
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| Protein GI | 93006993 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.29218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.574377 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTAC GCAATAACAA GGTAATGACG ATGAGCAACC GCGTATCTTC TACTTTTGCC
ATCTCTGCAT TGGCAATGAG TATGGTAGCT GTAAGTAGCA TTGCCCATGC CGAGCAGCGC
ATCAACAATG TCTCTGTGGT GCAGACTGCG CCAGCCGTAA CGCAAATGCG TTTAGGGTTT
TCAGGTGCGC CAGTATTACC AGCCGCTTAT CAGCTCGACA ATCCTAGCCG TTTGGTGCTG
GATTTTGAAC AGGTGCAAAA CGGTCTTGCT AGTCGCTTTA AAGAATATAA TATCGGTATG
GTCAATGAGG TCACCACCTT AAATAGTGAC AATACCACCC GTCTTATCGT TGGGCTAAAA
AAGACGGGCA ACTATACCAC CGCGATTGAT GGCAATGAAT TATTGCTGAC GATTACGGAC
CCTAATCGTC CAGTGATTGC TCCGGTGGTC ACGAAAGTCA TTACCAACGA CCCTGTACAA
GATGTCCTAA ATGGCAATTC GGCTATTACT ACCACGGCTG TGGTTACGCC CATTGTTGAA
ACCAGTAGCG TTGCTGTCCC GCCTATTAGA ACCACAGTCA CAAAAAACCA AGTACCTGCT
GACACCATGG TCGTACGTGT CAACCCTTTA TTAAGCCCAC AACTTGCCTC TGCACAAGTC
AGCAAGCAGT ATAGCTATGA TGGGCTAAGC GCTGTGAATT TTTCAGCAGG GAATGATGGC
GGTGGTAACG TTAGTATCTC ACTTGCCAAT GAAGCGATTC CTGTAGACGT TCAGCGTCAA
GGTAATAAGC TGGTTGTGCG TTTGACAGGC AGTACCGTAC CTAGAAATCT GCTACGCCGA
TTGAATGTTA ATGGTGGTTT GGTAGACAGT ATTGATACTA AAAACCAAGG TCAAAATGGT
GTTATTACCA TCAATATGAA AGACGATTTT GAATATCAAG CCTATCAATC AGGCAGTCAG
CTAAATATTG GTATCAGACG ACCTGAGCTG CTACGTGAGC CGACGCTTGA AGAAAAAGTC
TATACCGGTG CAGCGCTATC TATGGAGTTT CAAGATGTTG AGATTCGTAG TGTCCTAGAT
ATCTTAGCGC AGTTTACAGA GATGAATATC GTTGCTAGTG ATTCGGTCGC CGGTAATATT
ACCTTGCGCC TTATCAACGT ACCTTGGGAT CAAGCACTTG ATATCATTCT TAAAAGTAAA
AATTTGGGCA AACGTGAAAA CGGTAACGTA ATTTTGGTTG CGCCTTCAAC TGAGCTTGCT
GAACAAGAAG CACGTGAGCT TGAAGCCCAG CAAGCGGTTG AGTCTTATGC ACCGTTACGT
ACTGAATATA TCCGTCTAAG CTACGCAAAA GCGGCAGATG TCCTAACCCT GATCTCTCAA
GGTAGTGGTG GTGCCTCTGG CGGTAGCAAT ACTGGCAGCG CCAATGCTAA TACTAAAGAT
AGCAATAGCT TGCTCTCTAA TCGTGGAACA GTAACAGTCG ATGAGCGTAC CAATACTCTG
ATTGTTAAAG ATGTGGCAGC CAGCATTGAA AATATCCATA AGCTGATTGG TAAAATCGAC
ATTCCTGTCC GTCAGGTCAT GATTGAAGCG CGTATCGTTA GCGCGACTGA TAGCTTTAGT
AAAGAGATTG GAGTGCGTTG GGGTATCTTG TCAAATGGCG CTGCCAATAA CCGGAACTTG
TTGGTCGGTG GCAGTAACCA AACTTTATGG GACTTAAAAG ATTTTGATGT GCAGACCACG
ACTATTAATG GTCAGACCGT CTCTTATCCT AAATACGATA TTACTCGTCC TGACAATCTA
AACGTTGACT TAGGCGTTGA TAATCCAGCA GGTCGTATTG CCTTTGGTCT GCTAGGTATT
TCTGATTTTA TGCTCGATCT TGAGTTGTCA GCCATGCAAG CAGACAACCG CGGTGAAGTG
ATTTCTACGC CAAAGATTTT GACCTCTGAT AAGCAAACGG CAAAAGTATC TTCTGGTACG
CAGATTCCTT ATCAAGAAGC ATCAGCAAGT GGTGCGACTA CTACTAGCTT TAAAGAAGCT
GCTTTAAGTT TGGAAGCCAC GCCAAATATT ACTCCAGATG GTAAGATTGG TTTGCAACTG
TTAATCACCA ATGGCACACC GACCATTATT AATAATCAGG TTGCCATCGC TGAAGACTCG
ATTTCTACTA ACGTTATTGT TGAAGATGGT CAAACCATTG TATTGGGCGG CGTCTTTAAA
AACCGTACTA ATAATGGCGT CGATAAAGTA CCTTTCTTAG GTGATTTGCC TTATATCGGT
CGTGCCTTCC GTAAAGACGT GCGCAGCAAT ACCAAAGAAG AGCTGCTGAT ATTTATCACG
CCGAAACTGA TCAATGATGG TATTAGTCGC TTAGATTAG
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| Protein sequence | MTVRNNKVMT MSNRVSSTFA ISALAMSMVA VSSIAHAEQR INNVSVVQTA PAVTQMRLGF
SGAPVLPAAY QLDNPSRLVL DFEQVQNGLA SRFKEYNIGM VNEVTTLNSD NTTRLIVGLK
KTGNYTTAID GNELLLTITD PNRPVIAPVV TKVITNDPVQ DVLNGNSAIT TTAVVTPIVE
TSSVAVPPIR TTVTKNQVPA DTMVVRVNPL LSPQLASAQV SKQYSYDGLS AVNFSAGNDG
GGNVSISLAN EAIPVDVQRQ GNKLVVRLTG STVPRNLLRR LNVNGGLVDS IDTKNQGQNG
VITINMKDDF EYQAYQSGSQ LNIGIRRPEL LREPTLEEKV YTGAALSMEF QDVEIRSVLD
ILAQFTEMNI VASDSVAGNI TLRLINVPWD QALDIILKSK NLGKRENGNV ILVAPSTELA
EQEARELEAQ QAVESYAPLR TEYIRLSYAK AADVLTLISQ GSGGASGGSN TGSANANTKD
SNSLLSNRGT VTVDERTNTL IVKDVAASIE NIHKLIGKID IPVRQVMIEA RIVSATDSFS
KEIGVRWGIL SNGAANNRNL LVGGSNQTLW DLKDFDVQTT TINGQTVSYP KYDITRPDNL
NVDLGVDNPA GRIAFGLLGI SDFMLDLELS AMQADNRGEV ISTPKILTSD KQTAKVSSGT
QIPYQEASAS GATTTSFKEA ALSLEATPNI TPDGKIGLQL LITNGTPTII NNQVAIAEDS
ISTNVIVEDG QTIVLGGVFK NRTNNGVDKV PFLGDLPYIG RAFRKDVRSN TKEELLIFIT
PKLINDGISR LD
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