| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1664 |
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| Symbol | |
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| ID | 4034775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | - |
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| Start bp | 2048293 |
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| End bp | 2052024 |
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| Gene Length | 3732 bp |
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| Protein Length | 1243 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637974129 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_580925 |
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| Protein GI | 93006488 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0200808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTATCA CTGCTTTGAC TGACGCCTTT GCCCCGATTA ACCAGCAATT ATTCCCTATC
CAAAATGCCC AGCGTCGCTG GCTTGCACCT GTGCACGGTG CAGTCAGCAG CTTATGGCTG
GCAAGTTTAG TACAAGCACC TATATGGAAT GTTGTCGAGC GTCTAAAAGT CGTAGTGACG
CGTGACCAAA ATCAGCTGAA TCAAATAGAG ACAGAATTGG CGTTTTGCGG CGTGGATGCT
CATGTATTTC CTGATTGGGA GACGCTGACC TATGATGAGT TGTCACCGCA TCAAGATATT
GTCAGCGAGC GTATCAATTT ATTAACTGAT ATGCCAACGT CAGGCGTGCT ATTGATATCT
GTGCAAGCAT TAATGCACCG CGTCGCACCG CCAAGCTGGT TAATTGGACA GCATTTTGAT
TTAAGTGTTG GCGATCAATT TGATATCAAT ACCCAACGTA CCTTATTAGC AAAAGCAGGT
TATCGAGCGG TAGACAACGT TTTTGAGCCG GGGGAATTTG CGGTACGTGG TAGTATCATT
GATATCTTTG CCATGGGTCA GCCATTCCCG CTACGTCTGG ACTTATTCGA TGATGAAATC
GAAACGATTC GCTTCTTTAA TCCGCAGACC CAACGGACAT TAACTGTCGA TGACCTAAAA
GTCATGATGA GTGGCAACGA TAGTAGTATG GGCAAAGAGT CATTGTCGCT ACTGCATAAA
CTGCCAGATA TCTCAAAGCC TATTAAACAG TTTCAGATCC TACCCGCAAA AGAGTTTCCA
CTTGATGAAG GGCGTGAAAC CTTTCGCACC AATTTTGCTG CCCTGTTCCC CAATAGCAAT
AGCCGTAAGT TCGAATTACA TAAAGATGTG ATGGCAGGCA TTGCGAGTAG CGGATTGGAA
TATTATCAGC CACTGTTTTT TGATTTAAAA GATTGGACGG TAGAGAGTAG TTTATTTGCT
TATCTGCCAA GCGATACGCT ATTCATCACT GATGAGCTTA TTAACGAGAA ACAGGCGGAT
TATTGGTCGC AAATCCAGCG CCGCTATGAA GAGCGCCGTC ATGATATTGA TAAACCTATT
GTCGCCCCTG AGTTGCTGTA TCTATTGTCA AACACTCTTA ACGAGCATCT CAATCATTAT
CCACGGGTGA TACTCAGTGC ACGTAATGAA CTGTCGACAA TGAATGATGC ATCTGCGATT
GACGAGACAG TATTGGAGAG TCCATTACAG TTATCTGAGC AACCACAGTT AGATTTTGTT
CAGAATAAGC AACAAGGCTT GGTCACCTTA AGTGCGCAAG AGCCGCCACA GTTGGCCGTC
AATCATCAAA AAGCAGAGCC ACTTACTGAG CTGCTAGCGT TTTTAGAGCT ACAAGCGCAA
ACAGCAACAC CAGTATTGAT TGTCGCTGAA ACAGCGGGTC GCCGTGAGAT TCTTATTGAG
CTGTTTAAAG GTAAAATCGA CATCAAGGCT TATGACAGCT TTGAAACGTT TTTAGCCGCC
GATAAAAGCA CTGGTTTTAA AGATAGCAAG TTGCCACAGG TTGGTCTAAC GGTTGCACCT
ATTGAACGTG GCGTCTATGT TCCTGAGCGC TTGGTGTTGA TTAGTGAGAC ACAATTATTT
GGTCGGCAAG TGCTGCAAAC GCGCCGTCGT CGCCAAAGCG GTGTATCAGA AGAATTCTTG
GTTAAAAGCG TGACTGAAAT AACTGATGGC AGTCCAGTCG TCCATATTGA GCATGGCATT
GGACGTTATA ATGGTTTAAT AACCTTAGAT GTCGGAGATG GTGAGCAAGA ATTTATTCAC
TTAAAATACG CTGATGATGC CAGTATTTAC GTGCCGGTTG CCAATCTGCA AATGATTAAT
CGCTATAGCG GCGGCGACCC AGCGCTTGCA CCATTGCACA AGATTGGTAG TGGAAAATGG
GACAAAGCCA AGCAAAAAGC GCTCGAGCAA ATCCATGATG TCGCAGCTGA GTTGCTTAAT
ATACAAGCAC GGCGTGAGGC AAAGGTCGGT ATTCATTTTA AAATAGATAT CTCGCAATAC
GAGCTGTTTG CTAGTCAGTT TGCCTTTGAA GAAACACCGG ATCAAGCCAG CGCTATTCAT
GCAGTCATGG AAGATATGAA GCAGAATCAG CCCATGGATC GTCTCATCTG TGGTGATGTA
GGTTTTGGTA AAACGGAAGT AGCCATGCGC GCGGCATTCA TTGCGGTCAG TGCTGGTTAT
CAAGTAGCGG TGCTGGTGCC GACTACCTTG CTAGCCGGTC AGCATGAAGA CAATTTCCGC
AATCGTTTTG CTGATTGGCC AGTACGTATT GAAACGCTTT CGCGCTTTGG CGGTAAAAAA
CATCAAGACA CTGTGCTAAC AGACCTGGCG GCAGGCAAGG TTGATATCGT CATTGGTACG
CATAAGTTAT TACAGCCCGA TGTAAAGTTC TCTAATCTAG GTCTAATGAT TGTTGACGAA
GAACATCGCT TTGGAGTGCG CCATAAAGAG CGTATTAAGG CGATTCAGAC TGATGTCGAT
AGTATGTCGA TGACAGCGAC GCCCATCCCG AGAACGCTCA ATATGGCGCT CTCGGGTATG
CGTGATATGT CGATTATTGC CACGCCACCA GCCCGTCGTC TTGCGATTAA GACCTTTGTC
ATGCAGAAGA CTGACGCTTT GATGAAAGAG GCTATCTTGC GTGAGCTGTT GCGTGGTGGA
CAAGTTTATC TATTGCATAA TGATGTGGCG AGTATTGAGC GCATGGCAGA GACCATACGT
GAACTGGTGC CTGAAGCGCG AGTAGGGGTC GCTCATGGGC AAATGCAAGA GCGTCAACTA
GAACAAGTCA TGCAGCAGTA TTATCATAAA AAATTCAATG TGCTAATTTG TTCGACCATT
ATCGAAACCG GTATTGATGT ACCGAATGCT AATACCATTA TTATAGAGCG CGCGGATAAG
TTTGGTTTGG CTCAATTACA TCAGTTGCGT GGTCGCGTGG GTCGAAGTCA TCATCAAGCT
TATTGCTATT TACTTGTACC GTCTATTAAG GGGCTTAAAG GGGATGCCAA GCGCCGATTG
CATGCTATTG AGCGCGCTAA CACATTAGGT GCAGGCTTTA TGCTGGCAAG TGAAGATTTA
GAGATTCGCG GTGCTGGGGA AATACTTGGT AAGCAGCAAA GTGGTAATAT GCAGGCAATT
GGTTTCAGTC TATATATGGA TATGCTGGAG CGAGCAACGA AGGCGATTAA AGCCGGTAAA
GAGCCTGATT TAAGTACACC ATTATCGCTA ACCAGCGAAA TTAATCTGCA TAGCTCGGCA
CTGATACCAG AAGAGTATCT GCATGATGTG CATCAGCGTT TGTTATTTTA TAAACGTATT
GGCAATGCCG ATGATAAAGA AGCATTGACT GATATTCGAA CTGAAATGAT TGATCGTTTT
GGTGTTTTGC CAGACCAGAC CAAGCAGTTA TTTGCGGTTC ATGGTCTACG CATACAAGCC
GAGCCTTTGA AAATTAATAA AATTGATGCC AATAGTAATA GCATGACATT AGAGTTTGCA
CCCGATACCC CGGTCGATGC TTTGGCGATT ATTAAACTAA TTCAAGCAAA TGGGCAGCAC
TATCGTATGA ATGGTGCTTC TGGCATTCGC TATCAGGATG CTGATAAATT GGCAACACCG
CAGCAGCGTG TCACGGTGAT TCAAGAGTTA TTAAGCTATT TTAGCAAGCA TATGGTGGTA
GAGTCGGTTT AG
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| Protein sequence | MPITALTDAF APINQQLFPI QNAQRRWLAP VHGAVSSLWL ASLVQAPIWN VVERLKVVVT
RDQNQLNQIE TELAFCGVDA HVFPDWETLT YDELSPHQDI VSERINLLTD MPTSGVLLIS
VQALMHRVAP PSWLIGQHFD LSVGDQFDIN TQRTLLAKAG YRAVDNVFEP GEFAVRGSII
DIFAMGQPFP LRLDLFDDEI ETIRFFNPQT QRTLTVDDLK VMMSGNDSSM GKESLSLLHK
LPDISKPIKQ FQILPAKEFP LDEGRETFRT NFAALFPNSN SRKFELHKDV MAGIASSGLE
YYQPLFFDLK DWTVESSLFA YLPSDTLFIT DELINEKQAD YWSQIQRRYE ERRHDIDKPI
VAPELLYLLS NTLNEHLNHY PRVILSARNE LSTMNDASAI DETVLESPLQ LSEQPQLDFV
QNKQQGLVTL SAQEPPQLAV NHQKAEPLTE LLAFLELQAQ TATPVLIVAE TAGRREILIE
LFKGKIDIKA YDSFETFLAA DKSTGFKDSK LPQVGLTVAP IERGVYVPER LVLISETQLF
GRQVLQTRRR RQSGVSEEFL VKSVTEITDG SPVVHIEHGI GRYNGLITLD VGDGEQEFIH
LKYADDASIY VPVANLQMIN RYSGGDPALA PLHKIGSGKW DKAKQKALEQ IHDVAAELLN
IQARREAKVG IHFKIDISQY ELFASQFAFE ETPDQASAIH AVMEDMKQNQ PMDRLICGDV
GFGKTEVAMR AAFIAVSAGY QVAVLVPTTL LAGQHEDNFR NRFADWPVRI ETLSRFGGKK
HQDTVLTDLA AGKVDIVIGT HKLLQPDVKF SNLGLMIVDE EHRFGVRHKE RIKAIQTDVD
SMSMTATPIP RTLNMALSGM RDMSIIATPP ARRLAIKTFV MQKTDALMKE AILRELLRGG
QVYLLHNDVA SIERMAETIR ELVPEARVGV AHGQMQERQL EQVMQQYYHK KFNVLICSTI
IETGIDVPNA NTIIIERADK FGLAQLHQLR GRVGRSHHQA YCYLLVPSIK GLKGDAKRRL
HAIERANTLG AGFMLASEDL EIRGAGEILG KQQSGNMQAI GFSLYMDMLE RATKAIKAGK
EPDLSTPLSL TSEINLHSSA LIPEEYLHDV HQRLLFYKRI GNADDKEALT DIRTEMIDRF
GVLPDQTKQL FAVHGLRIQA EPLKINKIDA NSNSMTLEFA PDTPVDALAI IKLIQANGQH
YRMNGASGIR YQDADKLATP QQRVTVIQEL LSYFSKHMVV ESV
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