| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1576 |
|---|
| Symbol | |
|---|
| ID | 4035339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 1933223 |
|---|
| End bp | 1934722 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637974039 |
|---|
| Product | Sodium/proline symporter |
|---|
| Protein accession | YP_580837 |
|---|
| Protein GI | 93006400 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.84214 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGAG TTTCTAGTGG CGTGCTGATA TCACTTGGCG CCTATTTCTT AGTGATGATC
GGGATTGGGG TTTATGCTTA TTTTAAGCAA GCCAATGATA CCGAAGGCTA TATGCTTGGT
GGTCGTAGTC TCGGTCCTGC GGTAACCGCT TTATCCGCTG GCGCATCAGA CATGTCCGGT
TGGTTATTAC TTGGTTTACC GGGTTATATG TATGCCGATG GCGTCGTGAG TATCTGGATT
GCCCTCGGTT TGACATTGGG TGCATTTTTA AACTATATCA TCGTGGCACC GCGCTTACGT
GTTTACACTG AAATTGCAGA TAATGCCATC ACATTACCTG ACTACTTTGC AAATCGATTC
GAAGATAAGT CGCATATGCT GCGTGTTATC TCAGCAGTTG TAATTATTTT ATTCTTTACT
GTTTATACAG CAGCTAGCTT AGTTGGTGGT GGTAAACTGT TTGAAAGCTC ACTCAACTTA
TCTTATACCA CAGGTTTGTG GGTGACTGCT GGTGTGGTTG TCGCCTATAC TCTATTTGGC
GGCTTTTTAG CAGTGTCAAT GACTGACTTT GTACAGGGCA TTATCATGCT ATTTGCGATG
GTTATCGTAC CTGTTGTAGC CTTTACTGAT CTTGGCGGAA TTTCAGCCAC AACTGAGGCG
GTCAGGAACA TTGATCCAAG CTTACTTAAT GTCACCAGTG GTATGACGAT CCTTGGTATT
GTCTCGTTAA TGGCTTGGGG TTTGGGGTAC TTTGGGCAGC CGCATATTAT TGTACGCTTT
ATGGCTATTC GCTCAGTCAA AGATATACCA ACGGCACGTA ACATTGGTAT GAGCTGGATG
ATTGTGAGTC TAATCGGTGC ATTAATGACT GGTTTTGCAG GTCGTGCTTA TGTACAGAAA
ACAGCAATGA CTTTAGATGA TCCTGAAACT ATCTTCTTAG TATTCACCCA GTTCTTATTC
ACGCCATTAG TTTCAGGCTT CTTGTTAGCC GCTATTTTAG CCGCGATCAT GAGTACAATC
TCATCACAGC TATTGGTCGT ATCAAGCTCA CTAACCAAAG ATGTGTACAA GCTGTTTTTT
GATAGAGATG CACCAGAAGC CCGCCAAGTA ATGGTCGGTC GTCTTTCAGT TATCGTGGTC
GCCGTCGTTG CTATTTTGCT GGCTTCTAAT CCTGAAAGCT CTGTATTAAG TTTGGTCTCT
AACGCTTGGG CAGGATTTGG TGCGGCATTT GGACCGTTGG TTATTTTCAG TCTTATCTGG
CGCGGTATGA ACCGAAACGG TGCGGTTGCT GGTATGGTCG TTGGTGCATT AACTGTCATC
TTATGGATCT ATGGTCCTTT CCAGATGAAT GGTATGGCAC TAAATAGCTG GTTATACGCT
ATCGTTCCAG GCTTTATCCT AAGTACTATT GCCATCTTTG CTGTAAGTAT TATGACAGGT
GGTCCAAAAG CCTCAGTCTC AGCGAAGTTT AAAGAAATGG AAATGAACTT AGATCAATAA
|
|---|
| Protein sequence | MNGVSSGVLI SLGAYFLVMI GIGVYAYFKQ ANDTEGYMLG GRSLGPAVTA LSAGASDMSG
WLLLGLPGYM YADGVVSIWI ALGLTLGAFL NYIIVAPRLR VYTEIADNAI TLPDYFANRF
EDKSHMLRVI SAVVIILFFT VYTAASLVGG GKLFESSLNL SYTTGLWVTA GVVVAYTLFG
GFLAVSMTDF VQGIIMLFAM VIVPVVAFTD LGGISATTEA VRNIDPSLLN VTSGMTILGI
VSLMAWGLGY FGQPHIIVRF MAIRSVKDIP TARNIGMSWM IVSLIGALMT GFAGRAYVQK
TAMTLDDPET IFLVFTQFLF TPLVSGFLLA AILAAIMSTI SSQLLVVSSS LTKDVYKLFF
DRDAPEARQV MVGRLSVIVV AVVAILLASN PESSVLSLVS NAWAGFGAAF GPLVIFSLIW
RGMNRNGAVA GMVVGALTVI LWIYGPFQMN GMALNSWLYA IVPGFILSTI AIFAVSIMTG
GPKASVSAKF KEMEMNLDQ
|
|---|
| |