| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1565 |
|---|
| Symbol | |
|---|
| ID | 4034417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 1919528 |
|---|
| End bp | 1921333 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637974028 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_580826 |
|---|
| Protein GI | 93006389 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.218549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTGTC ATTTATCTTA CCGCTTGACT AGCATACATC GCGCAGTATC GATGGCATTG
TTTTATTCAA TAAGTTATGC AGCCTTAATA TCTAGCGCCC AAGCAGCGAC TATCGGCAAA
ACAGTTGTTA TTTCAGCTCA GCACGAACCT TTAGTTGCCA GTATTATGGT CACTGATATT
GAAAACACTG ACTTTTCAGC CAGTTTGGCA AATTCTGCCA TTTATCAGCA AATGGGTCTA
ACCCCAACTG ATTCCATGAT CGTACGCTTT CATCCGACTT CAGCTACAAG TGGTCAAGTT
TTTATTACCA CCACCAAGCC TATGTCCAAA CCCTTTGCCG ATGTGGTTCT AGCAATTAAT
GATGGCAATC AGCGTAATGT TATCCCAAAA ACATTACTGA TGCCGCTTAA TGATAGCTTG
CCGATTGCGA CTTCTAAAAA TATCGTAACA GGCGCAAAAA AGCCTAATTT ACCCGTGGTT
TCTACAACTA ACGCGCAGCC ATTGACGGTT AGAAATGGTG CACCGCCACC TTTATTATCA
TCTGGTTCAT CGAAACCTAC ACTAAAGGCT GCAACATTAC CCGAGCGCAA TGTTCAATCG
CCTAATATAC GAGTACCTGT TATTCAAACG CCAAGTATCC AAGCGTCAAG CTCACAAATA
CCAAGCGTTC AGGCAACGAC TATACCCTCT GGCTTACCAA CAGCAGTTGC AACAACGACA
CAAAGCAATA TCACAACCTA TGCGCCTAGC CGTTTAGAAA ACGGTCGATT AAATAATCCT
ATTGATATAA AAAACGATAG TGTCATGGCG GTCGCAAATA ATGACAATAA TACAGCTTTA
ACCGTCTCAT CAAATAGTAC GCTTTCTGCT ACTAGCGAGA CTGATAAACA GCTCGATATT
TTAAACATAC AAATTACTCG TCAGATACAG CCGAAGAGTC AAAGCAATAC AGATATGATG
GTTGCTAGTC CTATGGCTCC TAAAACCCTG ACGCCGAATG AAGCAGCTTT CACCAATAAA
AATAAAGCTA TTATTCCAAA TGATAGTAAT AATATGGTCG CTACAGCCCC ACTCAACAAT
ATTCCCCCTA ACTCGAATGC TTGGCAGAAA GCAGTGACGC CTAAAACGTC GGCCGCAGCA
AAAAACACTT CAAGGCAAGT ATCAGATAAT TCAGCTAGTA GCGAGATCAA TTATACCGTG
CAGCGTAACG ACAACTTGTG GGTGATTGCC CAGCAAATTG CAGAGAAGAA CAATATCGAC
GTTCAAACCG TCATGAAAGA AATTCAGACG CAAAATCCTG ACGCTTTTAT CAATAGAAAC
GCCAATCAAT TAAAAGCAGA TGCACAGTTG AGTTTACCTA ATTATGATGC GCTACCTTCA
CAGCAAAAAC TTGAAGCTGC TATCAGTGCT CAAAGGCAAT ATAGAGGCGC CAATACACCT
GTCGCAAAAA AACCAACTGC ATCAAATCCT GTGTCCAAAG GTGACAATAC GCAAGCAACA
AAACATACTG AAAAGCCGGC GACCACTAAG ACTCAAATTT TACCAAAGGC GCAGTTTTCT
GTCCTTGCTC CCGGTCATGA AGGCAGCGCA GATGGCACTA AAACCAAAGC AGGCATAGCA
ACGGGTAACG GACTTAGCAT GGAAGTGTTA GACCTGCTTA AATCATCAAG ACAAAGTACT
GCTTCACAAG CGCAGCAGTT ATCAAAAACT AGTGGTACGC TTGAGAGCTA TACTCGCAAA
TTACAATTAC AAAATCGAAA ACTGGCTGAG CTGCAAGCTC GTCTCAAAAA ATTACGCAAT
CAATAA
|
|---|
| Protein sequence | MSCHLSYRLT SIHRAVSMAL FYSISYAALI SSAQAATIGK TVVISAQHEP LVASIMVTDI
ENTDFSASLA NSAIYQQMGL TPTDSMIVRF HPTSATSGQV FITTTKPMSK PFADVVLAIN
DGNQRNVIPK TLLMPLNDSL PIATSKNIVT GAKKPNLPVV STTNAQPLTV RNGAPPPLLS
SGSSKPTLKA ATLPERNVQS PNIRVPVIQT PSIQASSSQI PSVQATTIPS GLPTAVATTT
QSNITTYAPS RLENGRLNNP IDIKNDSVMA VANNDNNTAL TVSSNSTLSA TSETDKQLDI
LNIQITRQIQ PKSQSNTDMM VASPMAPKTL TPNEAAFTNK NKAIIPNDSN NMVATAPLNN
IPPNSNAWQK AVTPKTSAAA KNTSRQVSDN SASSEINYTV QRNDNLWVIA QQIAEKNNID
VQTVMKEIQT QNPDAFINRN ANQLKADAQL SLPNYDALPS QQKLEAAISA QRQYRGANTP
VAKKPTASNP VSKGDNTQAT KHTEKPATTK TQILPKAQFS VLAPGHEGSA DGTKTKAGIA
TGNGLSMEVL DLLKSSRQST ASQAQQLSKT SGTLESYTRK LQLQNRKLAE LQARLKKLRN
Q
|
|---|
| |