| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1348 |
|---|
| Symbol | |
|---|
| ID | 4034320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 1649536 |
|---|
| End bp | 1651584 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637973814 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_580613 |
|---|
| Protein GI | 93006176 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.188022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGATTA CAGAATTGGG CTATTTTGCC TTGCTTACCG CTTTTGTATT GGCGTTATTG
CAGGTAATTC TGCCAACTAT TGGTGTTATT CGTAACCAAG TTGCTTGGCA ACGACTAGCC
CCTAGCTTAG CTTGGGCACA GTTTGCCGCC ATGATAACGT CATTTGGCGC TTTGATAGCA
GGTTTTTATT ATAATGATTT TAGCCTCAGT TACGTCGCGC AGCATTCCAA TACGCTGTTG
CCTTGGTACT ATAAGTTATC GGCGACATGG GGCGGACACG AGGGCTCTTT GCTGCTATGG
ATGACCATCA TGGCCACATG GTGTGCACTG GTATCATACT TTAGTCGCGG CTTGCCGTTA
TCAATGCGTG CGCGGGTATT AGTTATTTTG GCCGGTGTAC AGTTAATGAT GCTAACAATG
CTGATATTTA CCTCGTCACC GTTTGAGCGT ACCTTACCCA ATCTAGCGGT CGATGGCGCT
GATTTAAATC CTGTCCTACA AGATTTCGGT CTGATTATTC ATCCGCCCAT GTTATATATG
GGCTATGTGG GTATGGTAGT GCCTTTTGCA TTTTGTATGG CGGCATTGTG GGAAGGGCGT
TTAGATGCTG CTTGGACACG CTGGTCACGT CCATGGGCGC TCGCGGCTTG GGGATTTTTG
ACCATTGGTA TTGCACTGGG CTCGTGGTGG GCCTACTACG AGCTTGGCTG GGGCGGTTGG
TGGTTTTGGG ATCCGGTAGA GAACGCCTCG TTTATGCCTT GGCTTGTCGG CTTAGCATTG
CTGCATTCAT TAGCAGTCAC TGAAAAGCGC GGGGTGTTTA AAGCATGGAC CATCATGCTG
GCTATTTTCG CCTTTGCCTT AAGCTTGCTT GGCACGTTCC TGGTACGCTC TGGAGTCCTT
ACCTCAGTGC ATTCGTTTGC CGCTGATCCG ACGCGTGGTT TGGTCATCTT AGCTATTCTT
GGCATTATCA TCGGTAGTGG TCTATTAATG TTTGCCGTTC GCGGTTGGCG TTTAACCGTT
GAAAGTCAAT ATCAGCTGAT TTCACGTGAG TCCTTTTTAG TGATCAATAA CGCCATCATT
TTGATTGCAA CCTTAGTGGT GCTGCTCGGC ACCCTCTATC CTATTATCGC TGATGCCTTT
GGTTTAGGAC AAGTGTCCGT TGGCCCTCCT TATTTTAATG CATTATTTGT ACCTTTAACG
TGGCTGTTAT TAATAGCTAT GGGTATGGGC TCAAATATTC GCTGGAAAAA AGACACCCGT
CCACTACTGG GTATAGGCAT GGTCATCGCC GTTAGTAGCT TAGTATTAGC CGCCATTATT
ACTTACTTTG TTAATCCATC GTCTATGCTT AATATTGGTG TGACTTTAGC CGTTAGCTTT
TGGGTACTGC TATGGATGGC AGTTGATTTT AAAGATAAAA CTAAGAATGC GCCTAATTTT
TTTAACGGTT TGCGGCAGTT GCGTCTGAGC TATTGGGGTC AACAGACTGC TCATATTGGC
GTATTGGTTG CTGTCATTGG CATAGCCTTT ACTAGTAGCT TGAGTATTGA GCGTGACGTA
GCAATGGGTA TTGGCGATAC AGTCAATGTT CAAGGTTACG ATTTTGAAGT AACTGAATTT
TTTGAAATAA AGGGTAGTAA CTTTGATGCA ACGCAGGCGC AAGTCGTGGT ATCCAAAAAC
GGTCGTGAAG TGGCGAAACT GAATCCAGAA AAGCGTACTT ATATCATTAG CACTATGCCG
ACCACTGAGG CGGCCATTGA TGCTAGCCTA ATGCGCGATG TTTATGTCGC ACTGGGCGAA
CCTATTGCCG ATGGTAGTAA CCAATGGGCA TTAAGGATTT ATGTAAAACC ATTAATTCGC
TGGATTTGGT TAGGGGCAAT TATCATGGCT CTAGGTGGAT TAATTAGCAT GCTTGATAAA
CGATACCGCA TCAAAAAAGT TAAAGCTCCA TTGCTAGTTA CTGGTGATCT GGCTACTGAT
GGAGTCAATG AGGTAGCTAT TGAGCAGGCA ATCTCAGCAT CGACGATGTC GACACTAAAG
GAGAAATAA
|
|---|
| Protein sequence | MLITELGYFA LLTAFVLALL QVILPTIGVI RNQVAWQRLA PSLAWAQFAA MITSFGALIA
GFYYNDFSLS YVAQHSNTLL PWYYKLSATW GGHEGSLLLW MTIMATWCAL VSYFSRGLPL
SMRARVLVIL AGVQLMMLTM LIFTSSPFER TLPNLAVDGA DLNPVLQDFG LIIHPPMLYM
GYVGMVVPFA FCMAALWEGR LDAAWTRWSR PWALAAWGFL TIGIALGSWW AYYELGWGGW
WFWDPVENAS FMPWLVGLAL LHSLAVTEKR GVFKAWTIML AIFAFALSLL GTFLVRSGVL
TSVHSFAADP TRGLVILAIL GIIIGSGLLM FAVRGWRLTV ESQYQLISRE SFLVINNAII
LIATLVVLLG TLYPIIADAF GLGQVSVGPP YFNALFVPLT WLLLIAMGMG SNIRWKKDTR
PLLGIGMVIA VSSLVLAAII TYFVNPSSML NIGVTLAVSF WVLLWMAVDF KDKTKNAPNF
FNGLRQLRLS YWGQQTAHIG VLVAVIGIAF TSSLSIERDV AMGIGDTVNV QGYDFEVTEF
FEIKGSNFDA TQAQVVVSKN GREVAKLNPE KRTYIISTMP TTEAAIDASL MRDVYVALGE
PIADGSNQWA LRIYVKPLIR WIWLGAIIMA LGGLISMLDK RYRIKKVKAP LLVTGDLATD
GVNEVAIEQA ISASTMSTLK EK
|
|---|
| |