| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1166 |
|---|
| Symbol | |
|---|
| ID | 4034146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | - |
|---|
| Start bp | 1413136 |
|---|
| End bp | 1414503 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637973631 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_580431 |
|---|
| Protein GI | 93005994 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0236579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0144354 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTCC CGTTGTCTTT TGTAGATTTT AAAAGTTACA GTTTACGCTT AGGTATACTC
GCGCTGCCCA TCTTAATCAC CCAGTTTTGT CAAGCAGCGC TTGGTGTTGT CGATGCCATT
ATGGCAGGTC AAGTTTCGGC ACTTGATTTG GCTGCTGTCG CTGTCGGCTC AGGTATTTGG
CTACCATTAT TTTTATTAGC AACAGGTATT TTGATTGCGA CTACGCCTCT GATCGGTGAA
GCCATTGGTC AAAACCAACT CGATAAAGTA CCACATATCA CGCAGCAGTC ATTATGGACG
GCTGGTGTCA TTGGTATCCT TGGTTTTATC ATTGTTAACC TAGCACCCAA TGTGCTTGCC
CTCATGGGTG TTCCTGAAAA TATACAACCG ATAGCAACTC AGTATTTGCA TGGCGTATCA
TTTGGCTTCC CTGCAATTGC CGTTTATGCG GTGCTGCGTA GTTACTGTGA AGCGCTTGGT
CGACCAGAGC CTGTGACAGT TATTAGTATC ATAGGGCTGC TTGCAGATAT CCCGCTTAAC
TATATTTTTA TCCATGGCTT ATTTGGCATG CCTGAGATGG GTGGCGCTGG TTGCGGGGTA
GCAACTGCTA TCGTTTTGTG GATTAACGTC TTATTATTAG CCGCTTATAC CAGCTTTACT
AAGCGTCAGC AATTTGCCAG TACGCGCTTT TTTTATGCCT TTGCCAGCCC AAATCGGGCA
CAGATAAAAA AACTTCTCAA GCTTGGTATT CCGATTGGCG TCTCTATCTT TTTTGAAGCC
AGTCTATTTA GCTTAGGCGC ACTGGTGATT AGTCCATTGG GTGAGCTGGC AACCGCATCG
CACCAAGTCG CCTTATCAGT GACCTCGCAG TTGTTTATGA TCCCAATTTC GGTCGCGATG
GCACTGACCA TTATGGTATC CAACCGCTTT GGTGAAAAAA ACCTAATGGC ACTGCGTCAA
GTACAAGCAA CCGGTCTTAT ATGGACGGTA CTTATTGCAT TTGCCTGTAT GATTGGTGTT
TGGCTATTTA GACCACAATT GGCAGCGGCA TTCACTGACA ATCCTGTCGT ACGAGCTCAA
GCCATGCATT TGCTCATCTT TGCGCTTGCT TATCAGCTAT TTGATGGCTG GCAAGTTAAT
GTCGCGGGTA TATTACGGGG CATGCAAGAT ACTACAATAC CGATGTGGGT TACCCTATTT
TGCTACTGGA TAGTGGCACT ACCGCTTGGT ATTTATCTAG TACGCTTTAC TGATATTGGG
GCGCAAGGTT TTTGGATGGC TTTAATTACA GGGTTATTTT TATCGTCTAT TTTACTTACC
ATACGTTTGC GATACCAACA AAAGAGATTG CTGGCAATGT GGGGATAA
|
|---|
| Protein sequence | MVFPLSFVDF KSYSLRLGIL ALPILITQFC QAALGVVDAI MAGQVSALDL AAVAVGSGIW
LPLFLLATGI LIATTPLIGE AIGQNQLDKV PHITQQSLWT AGVIGILGFI IVNLAPNVLA
LMGVPENIQP IATQYLHGVS FGFPAIAVYA VLRSYCEALG RPEPVTVISI IGLLADIPLN
YIFIHGLFGM PEMGGAGCGV ATAIVLWINV LLLAAYTSFT KRQQFASTRF FYAFASPNRA
QIKKLLKLGI PIGVSIFFEA SLFSLGALVI SPLGELATAS HQVALSVTSQ LFMIPISVAM
ALTIMVSNRF GEKNLMALRQ VQATGLIWTV LIAFACMIGV WLFRPQLAAA FTDNPVVRAQ
AMHLLIFALA YQLFDGWQVN VAGILRGMQD TTIPMWVTLF CYWIVALPLG IYLVRFTDIG
AQGFWMALIT GLFLSSILLT IRLRYQQKRL LAMWG
|
|---|
| |