| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1124 |
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| Symbol | |
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| ID | 4033667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | - |
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| Start bp | 1353403 |
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| End bp | 1355349 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637973589 |
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| Product | sigma 70 (RpoD) |
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| Protein accession | YP_580389 |
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| Protein GI | 93005952 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.675922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATG CAAGTAAGCG AGTATTTATG AACGATAAGT CAGTTTCTAA GTCCACATCT
CAACTGGCCA CCTTAATCCA AATGGGTAAA GAGCAAGGGT ATTTAACCTA TGCTGAGGTG
AATGACCAAC TGCCCGACTC TATTACCGAA AGCGATCAGA TCGAAGATAT TGTACAAATG
CTAACCGACG TTGGCATCAA AATCTTTGAA TCTGCGCCTG ATGCCGATGA CATCTTGATG
AACGATGATT CAAGTGATGA TGACATGGCA GCGGATGAGG CAGCAGCGGT ACTAGCTTCT
GTTGAGACCG AACCTGGTCG CACCACTGAC CCTGTGCGTA TGTATATGCG TGAGATGGGT
ACGGTTGATC TATTAACGCG CGAAGGCGAG ATTGCCATTG CCAAGCGTAT CGAAGAAGGC
ATTCGTGACG TACAGCATGC CATGTCTTAC TGGCCGGGTA CGGTACAATT CGTCCTTGAC
GAGTACCAAA AAGTCCAAGA TGGCGAAAAA AAGCTTTCTG ACGTTATCAC TGGTTTCTTA
GACCCTGAAA CCGAAGAAGA CAAAATCGCT GCTCAAGAAG CCAAAGAAGC GGCGAAGGAA
GAACGCGAGC GCATCAAAGA AGAAAAAGAA AACCCGCCGA TCATCAAAGA AAAAGCCAAA
GTAAAATCTG GGCTTGATGA TGACGAGGAG GACGACGAGG AAGTGGAAGA GGACGCTGAA
GAAGAAACCA GCGGTATCGA TCCAGAAGAA GTGCGCTTGC GTCTAGAAGA GATCGAGCAT
CTATTTATTA AAGCCAAGCA AGCCTTACTT GATTATGGTC GTGGTAGTGC ACAAGCCAAT
GAAGCTTATG AGCAGCTGGC TAGCCGCTTT ATGATGCTAA AGCTGAATAA CCGTCTATCT
GATCAAGTCA TGGCTATTAT GCATGATGTC TATGATGACG TGCGTAAGCA TGAGCGTCAA
ATCATGCGCT TGGTGATTCG CCGTGGTCGT ATGCCGCGCG AAGAGTTCCG TAAGACTTTT
CCAAGTAATG AAACCAACGT TGATTGGTTG ATTGAGCGTA TTAAAGGTAA GCCTGCTTTT
GCTGCCACGT TAGAGAAAGT CGCCGACGAT GTTATCTTGT TACAACGTGC TATCCGTGAT
TACGAGCATA AGCTCGAGAT GGAAATCCAC GACATGAAAG ATGTGGCGCG CCGTATGGCT
ATTGGTGAAG CCAAAGCCCG CCGTGCCAAA AAAGAGATGG TCGAGGCTAA CTTACGTCTC
GTTATCTCAA TTGCCAAAAA ATATACAAAC CGTGGTCTAC AGTTCTTGGA TCTGATCCAA
GAAGGTAATA TCGGTCTGAT GAAAGCCGTC GATAAATTTG AATATCGCCG TGGTTATAAG
TTCTCGACTT ATGCCACATG GTGGATTCGT CAGGCAATCA CCCGCTCTAT CGCTGACCAA
GCACGTACCA TCCGTATCCC TGTGCATATG ATTGAGACGA TTAATAAGAT CAATCGTGTC
TCTCGTCAAT TGCTACAAGA AATGGGACGC GAGCCAACGC CTGAGGAATT AGGCGAACGC
TTAGAGATGG ACGAAGCCAA AGTCCGTAAA GTACTAAAAA TCGCCAAAGA GCCTATCTCA
ATGGAAACCC CTATCGGTGA TGATGAAGAC TCACACCTAG GTGATTTTAT CGAAGATGGT
ACGATCTCAA GCCCTGTTGA CGATGCGACG GCTGCGGGTC TACGTGAAGC GACGCGTGAT
GTATTGGGCA ACTTGACTGA GCGTGAAGCA CGCGTGCTCA AAATGCGTTT TGGTATCGAT
ATGCCGACCG ACCATACTTT GGAAGAAGTT GGTAAGCAGT TTGATGTGAC GCGTGAGCGT
ATTCGTCAGA TTGAAGCAAA AGCCTTGCGT AAATTGCGTC ATCCATCACG CTCTGAGCAT
CTGCGCTCTT TCCTTGAAAA TGACTGA
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| Protein sequence | MSDASKRVFM NDKSVSKSTS QLATLIQMGK EQGYLTYAEV NDQLPDSITE SDQIEDIVQM
LTDVGIKIFE SAPDADDILM NDDSSDDDMA ADEAAAVLAS VETEPGRTTD PVRMYMREMG
TVDLLTREGE IAIAKRIEEG IRDVQHAMSY WPGTVQFVLD EYQKVQDGEK KLSDVITGFL
DPETEEDKIA AQEAKEAAKE ERERIKEEKE NPPIIKEKAK VKSGLDDDEE DDEEVEEDAE
EETSGIDPEE VRLRLEEIEH LFIKAKQALL DYGRGSAQAN EAYEQLASRF MMLKLNNRLS
DQVMAIMHDV YDDVRKHERQ IMRLVIRRGR MPREEFRKTF PSNETNVDWL IERIKGKPAF
AATLEKVADD VILLQRAIRD YEHKLEMEIH DMKDVARRMA IGEAKARRAK KEMVEANLRL
VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK FSTYATWWIR QAITRSIADQ
ARTIRIPVHM IETINKINRV SRQLLQEMGR EPTPEELGER LEMDEAKVRK VLKIAKEPIS
METPIGDDED SHLGDFIEDG TISSPVDDAT AAGLREATRD VLGNLTEREA RVLKMRFGID
MPTDHTLEEV GKQFDVTRER IRQIEAKALR KLRHPSRSEH LRSFLEND
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