Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcryo_1108 |
Symbol | secD |
ID | 4033690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter cryohalolentis K5 |
Kingdom | Bacteria |
Replicon accession | NC_007969 |
Strand | - |
Start bp | 1333011 |
End bp | 1334888 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637973573 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_580373 |
Protein GI | 93005936 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0562212 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.23819 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATATC CCGCTTGGAA ATACCTACTC ATCACCGTCG TACTTATCAT TGCCGGTCTA TACGCTGCTC CTAACTTATA TCCTGACGAA CCTGCCGTAC AGATTACCAG TGCTGCAGCA GGCACACAGT TGTCTGATGG CATTTTAACG CAGTCACAAG ACTTGTTAAA AGAAGCTGGC TTGAACTACC ATGATGGTAC GTTCAAAGGT AACAGTGCAT TGGTACGTCT TGACAATCCA GTCGATCAGC TCAAAGCTCA GGAAGTATTG AGAAAAAACT TGGGTGAGAA CTATGTAGTC GCACTGAACT TAGCGCAGAC AACGCCGCAG TGGTTGCGTG ATATCGGCGC AAAGCCCATG AAACTTGGTC TTGATTTGCG TGGCGGCGTT CGTTTCGTCT TAGAAGTTGA TATGGACAAG GCGCTCGAAC AACGTCTGAC CAGTGCCAGT CGCGATATTC GACGAGATCT AAGAGCTGAG CGCATTGCTG TCAAAGGTAT CAAAAACGAC AAGCGTAGCG TGGTATTGCA TTTTTCCGAT ACAGACACTC GTAACCGTGC CCAAAACGTT TTGCAAAGCT CAATGGGTAA TACCTTTGCC CTGCAATCTT CTATTGATGA GCAAGGCCCT GCCCTGATTT TGGCGTATAA CGATGCAACG CTTGATGAAA TCAACAGCTA TGCGGTCAAT CAAAACTTGA CTACCCTACG CAATCGTATT GCTGAACTTG GGGTAACAGA AGCCTTGGTA CAATCACAAG GTGCTAGCCG TATCGTCGTT GAGCTACCAG GTGTACAAGA TACCGCTGAG GCAAAACGCG TCCTTGGTCG TACGGCCAAT CTTGAATTCC GTATGGTCGC TGAAGGTGCC GAAAACTATA CAGGCGGTAT TCCACCTGCC GGTACTGAAG CGTTCCCATT TGAAACCCTT GATGGTCCGC CAGTATTATT AGAGCGCCAA GCGATTGTCA CTGGTGATAA AGTTACCAAT GCTCAAACCG GTATTGATGA AAGTGGCTCA CCTGAGGTTA GTATCACCTT AGACAGTGCT GGTGGTAAGC TGATGCAGAA TGCTACCCGT ACAGCGGTTG GCAAACAAAT GGCAGTATTG TTTATTGAAA ATAAACAGCG CATCGCTTAT GAAGAAGACC CAGTTACTGG CGAAACGACT GAAGTTCGGA CGCCATATGC TGAAACAAAA GTCATTAACC GTGCCAATAT CCAAGCAGTA CTAGGCTCAT CTTTCCGTAT CACTGGTCTG GATAGTAGTG CTGAAGCCGC TGAGCTTGCA TTGTTACTAC GCTCAGGCGC GTTAGCGGCA CCGATGTATT TTGTTGAAGA GCGCACCATT GGTCCATCAC TGGGTCAGGA AAATATCGAT AAAGGCTTAT TCTCTACGCA GGTTGGTTAC TTACTAGTCT TTGCATTTAT GATTATCTTC TATCGTCTGT TTGGTGTGAT TGCCAATATT GCTCTAGCAT TCAACGTTAT TATTATTATC TCTATTATGT CCATCTTAGG CTCATCACTG ACGCTACCGG GTATCGCTGG TATTGTATTG ACCATTGGTA TGGCGGTCGA TGCCAACGTG CTGATTTTTG AGCGTATTCG CGAGGAAATA GCTAATGGAG TCAGACCGAA ATCGGCTATC GTGGCAGGTT TTGATCGTGC TTATAGTAGT ATTTTCGATG CCAATATCAC AACCTTACTG GTCGCCTTTA TCTTATTTGC GATTGGTACA GGTCCGATTA AAGGCTTTGC GATTACTTTA GCCATTGGTA TTGTCAGCTC GCTGTTTACG GCAATTTTAG TAACCCGTGC ACTGATACAA ATTGCTTATG GTAAGCGTAA ATCTATCAAA CGTCTGAGCA TCGGTTAG
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Protein sequence | MQYPAWKYLL ITVVLIIAGL YAAPNLYPDE PAVQITSAAA GTQLSDGILT QSQDLLKEAG LNYHDGTFKG NSALVRLDNP VDQLKAQEVL RKNLGENYVV ALNLAQTTPQ WLRDIGAKPM KLGLDLRGGV RFVLEVDMDK ALEQRLTSAS RDIRRDLRAE RIAVKGIKND KRSVVLHFSD TDTRNRAQNV LQSSMGNTFA LQSSIDEQGP ALILAYNDAT LDEINSYAVN QNLTTLRNRI AELGVTEALV QSQGASRIVV ELPGVQDTAE AKRVLGRTAN LEFRMVAEGA ENYTGGIPPA GTEAFPFETL DGPPVLLERQ AIVTGDKVTN AQTGIDESGS PEVSITLDSA GGKLMQNATR TAVGKQMAVL FIENKQRIAY EEDPVTGETT EVRTPYAETK VINRANIQAV LGSSFRITGL DSSAEAAELA LLLRSGALAA PMYFVEERTI GPSLGQENID KGLFSTQVGY LLVFAFMIIF YRLFGVIANI ALAFNVIIII SIMSILGSSL TLPGIAGIVL TIGMAVDANV LIFERIREEI ANGVRPKSAI VAGFDRAYSS IFDANITTLL VAFILFAIGT GPIKGFAITL AIGIVSSLFT AILVTRALIQ IAYGKRKSIK RLSIG
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