| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1106 |
|---|
| Symbol | |
|---|
| ID | 4033688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | - |
|---|
| Start bp | 1330131 |
|---|
| End bp | 1331549 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637973571 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_580371 |
|---|
| Protein GI | 93005934 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.373516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.414294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCTA TGCTACCGCC ACGTCCTATG CCGTCTATTG ATACTCGCTA TGCACGTATT
ATCGCTATTG CATTGCCAGT ATTATTGGCA AATCTTGCAA TGCCACTCCA AAGCGTCATT
GATACGGCGA TTATTGGCAA TATGAATGAT ACGGCAAAAC TTGCTGGTAT CGGGCTTGCA
GTACAACTGC TATCACTATT GCTCGTCAGT TTTAACTTTT TGCAATATGC TTCATCTGGA
CTTTCGGCAC AGGCGCTAGG ACAGCTGGCT AATAAAAATA CCGCTCATAA CGATACTCTA
AAGAATAATC CTAGTCAGCA ATCACCGCTG TTGTCCATCT TGCAACGCGC TTTGGTTTTG
GCATTTATGA TTGGTGCCGT TTTACTACTG GTAAAACCTT GGCTCATTGA TTTTGGTCTA
CAAGCGCTTG CCGCCAATCC TGATAGCGGC GATGCAGCAA AGACCTATTT AAATGTGCGC
TTTTGGGGTG TGATTGCTGA GCTAATGAAC TTTGCTTTTA TTGGCTGGTT TGCAGGTCAA
GGCAAGACCC GTTATATGCT ATATCAACAA GGTTTTATCG CTATACTCAA TATCATTCTG
ACACTATTTT TTGTTTTTGC AATGGATATG GGCTTGGTCG GTGTTGCATT GGGTACAGCG
ATTGCGTTTT GGTTGGGCGT AGTATTGGCA TTATGGTTAA GTCGTCTACA TTTGAAAATC
TCTTGGCAGG CGTTATTTAC TGCTGATCCG CAGCATTTTA ATAAAGATAA GATGCTTAGG
CTATTTTCAT TAAATAAAGA TATTTTTATT CGTACGCTTA TTTTAACATT AAGCTTTGCT
TGGATTACTC GACTCTCTGC TCAAAGCGGT GACGTCATAC TCGCTGCCAA TGCTATTTTA
TTACAAGTAT TGAGCATCTC AGCCTTTGCC CTTGACGGGG TGGCAGTCTC TGCTGAGACG
TTAAGTGGAC AAGCAGCAGG TCGACGAGAT TGGTCACGCT TTCGCATTAT CGTGAAACGT
ACCGGCATCG TCAGCTACGG TCTTGCTATT CTGCTAAGTG CAATATGGTG GCTTGCCATG
CCCACATATT TACAGTTTAT GACCAATATC GAACCTGTTT TTACGCTTGC TTATGACTAT
CATTTATATG CTGTCCTGTT ACCACTTGTC GGGGTTGGTG CTTACTGGTT AGATGGGATA
TTTTTTGGTT TAACAGCAGG TAGCATTATT CGCAATGCAG CCCTTATATT AGCGGCTATC
TTTTTCCCAT TGAGTTGGTT GCTTTATCAG CAGTGGGCTA TGACGGGCAT CTGGCTCAGC
GTATGGTGTT TATTGTTGCT AAGAATGCTG ATACTTGCTG GATTTTTATA CCATGCTCAT
CAAACTAGCA GCTATGAAAA ACTCCAACTT GACCATTGA
|
|---|
| Protein sequence | MSSMLPPRPM PSIDTRYARI IAIALPVLLA NLAMPLQSVI DTAIIGNMND TAKLAGIGLA
VQLLSLLLVS FNFLQYASSG LSAQALGQLA NKNTAHNDTL KNNPSQQSPL LSILQRALVL
AFMIGAVLLL VKPWLIDFGL QALAANPDSG DAAKTYLNVR FWGVIAELMN FAFIGWFAGQ
GKTRYMLYQQ GFIAILNIIL TLFFVFAMDM GLVGVALGTA IAFWLGVVLA LWLSRLHLKI
SWQALFTADP QHFNKDKMLR LFSLNKDIFI RTLILTLSFA WITRLSAQSG DVILAANAIL
LQVLSISAFA LDGVAVSAET LSGQAAGRRD WSRFRIIVKR TGIVSYGLAI LLSAIWWLAM
PTYLQFMTNI EPVFTLAYDY HLYAVLLPLV GVGAYWLDGI FFGLTAGSII RNAALILAAI
FFPLSWLLYQ QWAMTGIWLS VWCLLLLRML ILAGFLYHAH QTSSYEKLQL DH
|
|---|
| |