| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_0378 |
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| Symbol | rumA |
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| ID | 4034553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | - |
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| Start bp | 459410 |
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| End bp | 460951 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637972827 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_579645 |
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| Protein GI | 93005208 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0129185 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACCCA CCGATTCAAA GACGCTTACC AACGTAGATG CAACCGAACA GGCAAATGAG
ACGCAAACCA TTACGATTCC GCCTAATAAG AAAAAATCTA AGCCATCATC AAAGACGCGT
CGTCGTCTAA AAGATGCTGA GCCACTCCCC TTTACCATCG ATGGCTTGTC ACATGATGGG
CGCGGCGTTG CGGTATACGG TAATGGCTTT GGTGAAACTG ATGGTCATAT CACAGACAAG
CATGGCAAAA AAATCTTTGT CAGCTTTGCC CTGCCAGGTG AAAGTGCGTT GGTCAAAATT
ACCAATAGCC GCACCAGCTT TGAAGAGGGT GATGCCGTTA GAATCACTGC CAATCCAAAC
CCTGAGCGCG TGGTACCACC CTGCCCACAT TTTGGTGTTT GCGGTGGCTG TAATTTGCAG
CATTGGCAGC CAGATGCACA AATTACATTT AAGCAATCTG TCCTTGCTGA GATGTTGGTC
CATCAAGCCA ATGTGGCACC TGATCACTGG CTTGAGCCGG TAGTCGGTGA TCGCCTTGGC
TATCGTACCA AAGCCCGACT GGGCGTACGT TATGTGGTCA AAAAAGAAAC GGCTTTGGTC
GGCTTTCGCG AGCGTTCAAG TAATTTCTTA GCAGAGTTAA ATGAGTGTCA TATCTTAGAT
CCGCGTATTG GCTTTGAGAT TGAAAACTTA AAAACCCTTA TTAGTACTTT AGATAGCCGT
GACAAGATTG CTCAGCTTGA GTTGGCAATG GGCGAGCATT TACCAGAGCT GCCTGATGGC
GATCAGCCAG TCGCGCTAAT TGTGCGTAAT CTTGAACCGT TATCAGATGG CGATATTGAT
AAGCTAAAAG TATTTTTTGC AGCACGTAAT TGGCAGCTGT ATCTACAATC AAAGGGTGCC
GATAGCATCC AACGTATTGC CTTGAGGGAT ACAGATGATT TAAGCGAGCA GTTTGGACGT
TTGTATTATC AATTACCAGA GTATGATTTG ACGTTTGAAT TTATTCCTAC CGATTTTACC
CAAGTTAATC TGTCGGTGAA TCGTCAGATG ACCAAGCTGG CTTGTGACTT GCTTGATTTA
AAAGCAGGTG AACGCGTTCT AGATTTATTT AGCGGTTTAG GCAATTTTAG CCTGCCTCTC
GCGCGTTTGG TTGGTGAAAC CGGCTCGGTC GTTGGTGTTG AAGGCAGTGA AGCTATGACT
GCACGCGCCG CTGATAACGC GCGCCGCAAT GGCATTAATA ACACTGAGTT TTATAGCCAA
GATTTGACGC ATGACTGTAC GGACAAACCG TGGGCTAACC AAGGGTTTGA TGCGCTGCTT
ATCGATCCAC CGCGTTCTGG CGCGTGGGAG ATTATGCAAT ATTTGCCTAA GTTTAACGCC
GAGCGGATTG TCTATGTCTC CTGTAATCCT GCTACACTTG CTCGCGATAC CAAAGCATTG
CTTGAACAAG GTTATCGTTT GACTCACGCT GGCGTCATGG ATATGTTTTG TCATACTGGT
CACGTTGAAT CCATCGCGCG CTTTGAAAAA ATATCTGCTT AA
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| Protein sequence | MQPTDSKTLT NVDATEQANE TQTITIPPNK KKSKPSSKTR RRLKDAEPLP FTIDGLSHDG
RGVAVYGNGF GETDGHITDK HGKKIFVSFA LPGESALVKI TNSRTSFEEG DAVRITANPN
PERVVPPCPH FGVCGGCNLQ HWQPDAQITF KQSVLAEMLV HQANVAPDHW LEPVVGDRLG
YRTKARLGVR YVVKKETALV GFRERSSNFL AELNECHILD PRIGFEIENL KTLISTLDSR
DKIAQLELAM GEHLPELPDG DQPVALIVRN LEPLSDGDID KLKVFFAARN WQLYLQSKGA
DSIQRIALRD TDDLSEQFGR LYYQLPEYDL TFEFIPTDFT QVNLSVNRQM TKLACDLLDL
KAGERVLDLF SGLGNFSLPL ARLVGETGSV VGVEGSEAMT ARAADNARRN GINNTEFYSQ
DLTHDCTDKP WANQGFDALL IDPPRSGAWE IMQYLPKFNA ERIVYVSCNP ATLARDTKAL
LEQGYRLTHA GVMDMFCHTG HVESIARFEK ISA
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