| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_0249 |
|---|
| Symbol | |
|---|
| ID | 4034103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 293243 |
|---|
| End bp | 294811 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637972695 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_579517 |
|---|
| Protein GI | 93005080 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAAC TGCCGTACAG TTTTGCAAAA CGCCATCAGA TTTTGGTTAT TCTAGCCATT
GATCCTGAGC TGCCACCGAC ATTGCTATTG ACCAAGGTGA CGCCGCTTTC AGCAATCAAT
GAAGCGGTGC GATTTTTACA GCAGCAAGGC ATACGCGGTG TGCCAATATA TGAAAGTGTC
AGCTCGGACG ATTTTGAGAA ACGCATGAAT GCCGCTTATG CAGGTAATAC TGGCGAGTCA
CAGCATATCG CCGCTGGCCT TGAAGACCAT CCTGATCTTG ATAGCTTGGC AGATAGCGTG
CCTGAAACTG AAGACTTGAT GGACCAACAA GACGATGCAC CTATTATCCG TCTGATTAAT
GCATTATTGT CCGAGGCGAT ACGTCTAAAC GCCTCAGATA TCCATATTGA AACCTTTGAA
AAACGCTTGG TCGTTCGATT CCGCGTCGAT GGTGAGCTTA AAGAAATCAT CACACCAAAA
CGTCAATTAG CGCCGTTATT AGTATCGCGT ATTAAAGTGA TGGCAAAACT GGATATCGCT
GAAAAGCGCG TGCCGCAAGA TGGGCGTATT AGCTTGCGCT TAGCGGGGCG CGAGGTTGAT
GTGCGGGTAT CGACATTGCC GTCAAGTTTT GGTGAGCGTG TGGTCATGCG CTTACTAGAT
AAGCAAGCAG GTCGCCTGAA TATGACCTAT TTGGGTCTAT CTGATAATGA TTATAGTGAG
CTTAAGCGCT TAATCCATCG CCCGCATGGC ATTATTTTAG TGACAGGACC GACAGGCTCG
GGTAAAACCA CCACGCTATA TTCCGCATTG ACTGATTTAA ATGATCAAAC CCGTAATATC
TTGACGGCTG AAGATCCAAT TGAATTTCAG CTCGATGGTA TTGGGCAAAC GCAGGTCAAT
AATAAAGTCG ATATGACCTT TGCTAAGAGC TTGCGTGCAA TGTTGCGTCA AGACCCAGAC
GTGGTCATGG TGGGTGAAAT TCGCGATTTA GAGACAGCAG AAATCGCTGT GCAAGCATCT
TTAACAGGGC ATTTGGTCTT ATCAACCCTA CATACCAACA CCGCTATTGG AGCGGTTACG
CGCTTGCAAG ATATGGGTGT TGAGCCGTTT TTATTATCAT CATCATTGAT AGGCGTGGTC
GCCCAGCGTT TGGTACGTAC GTTATGTACA CATTGTCATG ATTGGCAAAT AGCTGACCCT
GAACAAGCCA AATTGTTTAC TGAGATTGGT ATTCAATCAA TGTCTGACAA TATTGCAGCT
AACAATGCTG CTGATAATCT GACAGATAAA GCTATCAAGC TACCTAGAGC AGTCGGCTGC
GATAAGTGTA ACCAATCAGG CTTCAAAGGG CGAACAGCGA TATATGAAGT GGTGCCCGTT
GATGATGCGC TGCGACGCAT GATTCATAGC AATACCGCCG AGTATGAGCT AGAAGAGTAC
GCCCGCCAAA AGACACCATC AATTCGTGCT GATGGTTTGC GTAAGGTAAT CGCGGGACGT
ACGACATTAG AAGAAGTGCT ACGCGTGACC AAAGAAAGCG CCCTACTTGA GGACGCTTTG
ATTGTTTAG
|
|---|
| Protein sequence | MMQLPYSFAK RHQILVILAI DPELPPTLLL TKVTPLSAIN EAVRFLQQQG IRGVPIYESV
SSDDFEKRMN AAYAGNTGES QHIAAGLEDH PDLDSLADSV PETEDLMDQQ DDAPIIRLIN
ALLSEAIRLN ASDIHIETFE KRLVVRFRVD GELKEIITPK RQLAPLLVSR IKVMAKLDIA
EKRVPQDGRI SLRLAGREVD VRVSTLPSSF GERVVMRLLD KQAGRLNMTY LGLSDNDYSE
LKRLIHRPHG IILVTGPTGS GKTTTLYSAL TDLNDQTRNI LTAEDPIEFQ LDGIGQTQVN
NKVDMTFAKS LRAMLRQDPD VVMVGEIRDL ETAEIAVQAS LTGHLVLSTL HTNTAIGAVT
RLQDMGVEPF LLSSSLIGVV AQRLVRTLCT HCHDWQIADP EQAKLFTEIG IQSMSDNIAA
NNAADNLTDK AIKLPRAVGC DKCNQSGFKG RTAIYEVVPV DDALRRMIHS NTAEYELEEY
ARQKTPSIRA DGLRKVIAGR TTLEEVLRVT KESALLEDAL IV
|
|---|
| |