Gene Nham_3991 details

Gene Information

• Locus tag: Nham_3991
• ID: 4031015
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 4361759
• End bp: 4363687
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637972349
• Product: ABC transporter related
• Protein accession: YP_579123
• Protein GI: 92119394
• COG category: [R] General function prediction only
• COG ID: [COG4178] ABC-type uncharacterized transport system, permease and ATPase components

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGAAGC CGCCAATCCT TGAAGTCGTC ACGGAGACCG GACATGCGGT CGAACCCCCG 
CCTCCAGAAA TCTTGGAACC CGACGCAGAT CTTTCGCCAG ATGAGATTGA GCAGGCACGC 
AAGGACTATT TGCTCACGCG ATTCTGGATC AGCGCCAAAG GATTTTGGGG TGCCAATGGC 
GGCAAGCTGG CCTGGGTGTT TTCTCTCGGC CTGATCGCCT TGATTATTAC AAACGTCGCG 
TTCCAATACG CCATCAACGT CTGGAATCGC GCGATCTTTG ACGCCATCGA GAAGCGTGAC 
GCCGCCACGG TTTTTTATCT AACGGGGGTA TTCTTCCCGC TCGCGAGCGG CAGCGTGGCG 
CTCGGCGTAT TTCAGGTCTT CGCACGCATG GGCATCCAGC GCCGCTGGCG CGCGTGGCTG 
ACCGATTCAG TGGTGTCGCG ATGGTTGACT AACGGCCGCT ACTATCAACT CAATCTTGTC 
AGCGGCGACC ACGAAAACCC GGAATATCGC ATCGCCGAGG ATCTGCGGGT CGCCACCGAC 
GCGCCGGTGG ATTTCGCCTC CGGCGTGATA TCCGCGTTCC TTTCGGCGGC AACCTTTATT 
GTGGTGCTCT GGACCATCGG TGGCGCGCTG ACCCTGACGG TCGGTGGGTC GACATTTACC 
GTGCCCGGTT TCCTGGTGGT GGCGGCGGTG ATCTATGCCG GAGTTACCAG CGGTTCGATG 
GTCTACATCG GCCGCCACTT TGTCGCGGTT TCGGAGAGTA AAAACCAGGC CGAAGCCGAA 
TATCGCTACG CGCTGACGCG CGTTCGCGAG AACGGCGAAA GCATCGCCCT GTTGGGTGGC 
GAGGAAGAAG AGCGCGACGG AATCAACAAA ACGTTCGCCA GCGTCATCAA GCAATGGGCG 
CTGCTGTGCG GTCAGCACAT GCGCACCACC ATCGTGTCGC AGGGATCGAG CCTGATCGCT 
CCGGTCATCC CGCTGCTGCT CTGCGCGCCG AAGTTCCTCG ATGGCAGCAT GACGTTGGGA 
CAGGTGATGC AGGCGGCGTC GGCCTTCACC ATCGTGCAGA GCGCGTTCGG CTGGCTTGTC 
GATAATTATC CGCGTCTGGC TGACTGGAAT GCCTGCGCGC GGCGGATCGC CTCGCTGATG 
ATGTCGATCG ACGGGCTGGA TCGCGCCGAG CGTGGCGACG GCATCGGCCG CATTCAGCGT 
GGCAAGACCG AGGGCGACGC AGTCCTCAGC CTTAACGACT TGTCGGTGAC GCTCGACGAC 
GGCACCGCCG TGGTGGGAGA AGCGGAAGTG ATCATCGATG CCGGCGAGCG CGTGCTGGTG 
GCGGGTGAGT CCGGGACCGG CAAAAGCACG CTGGTGCGGG CTATCGCTGG CCTGTGGCCA 
TGGGGTGGCG GCAGCGTCAG CTTCCATCCG GACCGTCGGT TGTTCATGCT CCCGCAAAAG 
CCGTACGTGC CGTTTGGAAC GTTACGTCGC GCTGCCGCCT ACCCCGCGGG TGCGGAAGAC 
TGGGCTCTCG AAGAAATTGG CACTGCGCTG GACAAAGTGG GACTTGGTCA TCTCAAGGAG 
CGACTTGAGG AAGAAGCGCC CTGGGACCAG ACGCTGTCGG GCGGCGAAAA GCAGCGGCTC 
GCTTTCGCCC GGCTGTTTTT GCACAACCCC GATATCATCG TGCTGGACGA AGCAACATCC 
GCGCTCGACG CAAAAAGCCA GGATAAGATG ATGGAACTCC TCAATAAGGA GCTTCCCAAC 
GCCACCGTCG TCAGCGTGGC ACATCGCGTC GAACTCGAAG CCTTTCATAC TCGAAAGATC 
GTTCTGGAAC GACGCAAGGG TGGCGCGAAG CTGGTGAGCG ATATTGACCT CATTCCGCGC 
AAGGGAAAAC GCCGCCTGCT GGGTCGTTTC CTCGCCAGCG CCAGCGGAAG GCATCGCGTT 
GAGAGGTGA 

 

Protein sequence

MPKPPILEVV TETGHAVEPP PPEILEPDAD LSPDEIEQAR KDYLLTRFWI SAKGFWGANG 
GKLAWVFSLG LIALIITNVA FQYAINVWNR AIFDAIEKRD AATVFYLTGV FFPLASGSVA 
LGVFQVFARM GIQRRWRAWL TDSVVSRWLT NGRYYQLNLV SGDHENPEYR IAEDLRVATD 
APVDFASGVI SAFLSAATFI VVLWTIGGAL TLTVGGSTFT VPGFLVVAAV IYAGVTSGSM 
VYIGRHFVAV SESKNQAEAE YRYALTRVRE NGESIALLGG EEEERDGINK TFASVIKQWA 
LLCGQHMRTT IVSQGSSLIA PVIPLLLCAP KFLDGSMTLG QVMQAASAFT IVQSAFGWLV 
DNYPRLADWN ACARRIASLM MSIDGLDRAE RGDGIGRIQR GKTEGDAVLS LNDLSVTLDD 
GTAVVGEAEV IIDAGERVLV AGESGTGKST LVRAIAGLWP WGGGSVSFHP DRRLFMLPQK 
PYVPFGTLRR AAAYPAGAED WALEEIGTAL DKVGLGHLKE RLEEEAPWDQ TLSGGEKQRL 
AFARLFLHNP DIIVLDEATS ALDAKSQDKM MELLNKELPN ATVVSVAHRV ELEAFHTRKI 
VLERRKGGAK LVSDIDLIPR KGKRRLLGRF LASASGRHRV ER