| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3912 |
|---|
| Symbol | |
|---|
| ID | 4032416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 4289539 |
|---|
| End bp | 4290699 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637972287 |
|---|
| Product | ribonuclease BN, putative |
|---|
| Protein accession | YP_579061 |
|---|
| Protein GI | 92119332 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1295] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR00765] YihY family protein (not ribonuclease BN) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.561181 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAGA GCTTGAACGT ACCTGGCGGG CAGCCCCACG GAAGAGGATG GCGTCTCGCT
GCGGCACTTG GTCTGTTGGC GGTGGCTTTT TTCGTCGGTC GGCTCGCACC TGCGGAAAAC
GAGGTTCCGT CGCCGAGAAA GAAGGCGAGT CGTGATGCTT CGGCCGCCGG TTTGACGACT
GCAGATAAAG GCCATGGCCG CTCGGCGACG ACGCCCTCCG AGATACCGTC CCGGCGCTGG
AAGGATATCC TGCTGCGCGT CTACGCCAAC GTGTCCGAGC ACCGTATCTT CGCGCTGGCC
GCCGGCATGA CCTACTACAG CCTGTTCGCG ATCTTTCCGG CACTGGCTGC AATGGTCGCC
GTCTACGGCC TGTTCTCTGA TCCCGCCACG ATCGCGAAAC ATTTCGATCA GGTCTCCGGA
TTTGTTCCGA GCGGCGCTAT CGATGTGGCT CGCGAGCAGC TCACGCGCGT CGCTTCGAAG
GGCAACCAGA CGCTGGGACT GACCTTCGCA ATCGGCTTGG CCGTCTCCTT GTGGAGCGCC
AACGCTGCGA TGAAGTCGCT GTTCGACACG CTCAACATCG TTTACGGCGA GAAGGAAACC
CGGGGTTTCG TGAAGCTGAA CGCGATGTCG CTGGCGTTCA CCATGACCGG CATCGTGTTT
GTTCTCGCCG CCCTCGGCGC CGTCGTAGTC GTCCCCGTCA TCCTGAACTA TGTCGGGCTC
TCGAACTTCG CCGATCTTCT GGTTCGCACG GCGCGCTGGC CCGCGATGTT CGTTGGCGTC
GCGCTGGCGC TGGCTCTGAT CTACCGCTTC GGCCCCGACC GGGAGGCGCC ACGGTGGCGC
TGGATCACGT GGGGGAGCGC GGTCGCGACG ATCCTTTGGC TCGCCGCATC AACCCTGTTC
TCCTGGTACG CAGCCAATTT CGGCAAATTC AACGAAACCT ACGGCTCGCT CGGCGCGGCT
ATCGGCTTTA TGACTTGGCT GTGGATCTCC GCCATCGTGA TCCTGCTCGG GGCGGAGCTC
GACGCGCAGA TGGAGTGGGA GATCGCCCAC ACCACAAAGG ACACACCGAA GCCGGTGGAC
GCGGGCGCCA AGGTGGCCGA CTCGGTGGGG CGTGCGCCAC CTGACATGTT TAGAGCCACG
CGCTCGATCT TGTGCCGCTG A
|
|---|
| Protein sequence | MGESLNVPGG QPHGRGWRLA AALGLLAVAF FVGRLAPAEN EVPSPRKKAS RDASAAGLTT
ADKGHGRSAT TPSEIPSRRW KDILLRVYAN VSEHRIFALA AGMTYYSLFA IFPALAAMVA
VYGLFSDPAT IAKHFDQVSG FVPSGAIDVA REQLTRVASK GNQTLGLTFA IGLAVSLWSA
NAAMKSLFDT LNIVYGEKET RGFVKLNAMS LAFTMTGIVF VLAALGAVVV VPVILNYVGL
SNFADLLVRT ARWPAMFVGV ALALALIYRF GPDREAPRWR WITWGSAVAT ILWLAASTLF
SWYAANFGKF NETYGSLGAA IGFMTWLWIS AIVILLGAEL DAQMEWEIAH TTKDTPKPVD
AGAKVADSVG RAPPDMFRAT RSILCR
|
|---|
| |