| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3907 |
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| Symbol | ligD |
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| ID | 4032663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 4284719 |
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| End bp | 4287421 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637972283 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_579057 |
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| Protein GI | 92119328 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.989644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCAAAA AACTGCTGGT AAAATACCGC GCCAAACGCG ATTTTTCGAA GACGGCTGAG
CCCAGCGGAA ACCTAAAGGT CAAGCCCTCG AAGAGCCTTC GCTTCGTCAT TCAGAAGCAC
GCAGCATCGC ATCTCCATTA CGACCTGAGG CTCGAACTCG ACGGCGTCTT CAAATCTTGG
GCGGTCACCA AGGGGCCGTC GCTGGATCCT CACGACAAGC GGCTTGCGGT TGAAGTCGAG
GATCATCCCC TGGACTACGG CGACTTCGAA GGCACCATTC CGAAGGGCCA GTACGGCGGC
GGCACGGTCA TGGTTTGGGA TCGCGGCTAT TGGGAATGCG ACGACCCGGA GCGGGCATAC
CAGAAGGGCA AGCTGGACTT TACCCTGGAG GGTGAAAAAC TTCACGGCGG CTGGATTCTA
ACTCGGATGC GAAAGCGAGA GGGCGAGAAG CGGACCAACT GGCTCCTGAT CAAACATCGG
GATGAATTCG CTCGGGAAGG GAAGAAGAAT AGGATCTTGC AAGAGGACAC GTCGGTAGCC
TCGAGCCGGT CGATGGACCA GATCACGGCC GGCAAGGGCA AGGGTCCGAA GCCTTTTGTT
GCGGCGAAGA GGTCAAGAGC ACCTGCAAAG GCGGAATGGA AACCGCACCG CGCCTCAGCC
CGAGCATCGA CGCCCAGAAA GAGATCTGCT CCCGACAGGT CCCGGGCCGG GCGTTCACCC
GAAAAGAAAG CCGGCGAGAA AGGCAACGCG ATTGCCGATC GAAGCATGCC GCCCTTCATC
GCGCCCCAGT TATGCTCTTT GGTCGAGCGC CCCCCCTCCG GCAGCGATTG GATCCACGAA
ATCAAGTTCG ACGGCTACCG CATCCAGATG CGGGTCGAGA ACAGCGACGT CTCCTTGAAG
ACTCGCAAGG GCCTGGATTG GACGCCGAAG TTCGGCGCGA TTGCGAAGGC CGCGGACGCA
CTGCCCGATT GCATCGTGGA CGGGGAAATC GTTGCCCTCG ACCATCGAGG TTCGCCGGAT
TTCGCGGGCT TGCAGGCCGC CCTGTCGGAT GGAAAGAGCG ACGACCTCAT CTTTTTCGCC
TTCGATCTTT TGTTTCTGAA GGGCGATGAC CTACGCCGGC AAAGTCTTGC CGACCGCAAG
CAGGCCTTGA AGAAACTTAT CGAGAAGACA TACGGTAAGG ACCAGGTCCA GGCCGAAATC
CGGTACGTCG AGCATTTCGA GAGCGGTGGC GAAGCTGTGC TCAAATCGGC CTGCAGGATG
TCGCTCGAGG GCATCGTCTC GAAGCAAACT GCCGCTCGTT ACGTGTCCGG GCGAACAGAG
TCCTGGTCCA AAGCCAAGTG TCGCGCCGGG CATGAAGTGG TCATCGGCGG CTGGAAAAGC
AATGGTAACC AGTTCAAATC GTTGATGGCC GGCATATATC GGGGTGATCA CCTCGTATAC
GTCGGTAACG TCGGGACCGG TTACAGTGCC GAGAAAGTCG CGCGCCTGAT GCCGAGGCTT
AAGGCCGCCG CTTCGGCGAC AAACCCGTTC GTCGGCAATA ATGCGCCTCG CAAGAAAGCC
GGAATGCATT GGTTGAAGCC CGAATTGGTG GCCGAAATCG AGTTCGCCGG ATTCACCGGT
GCCGGCATGA TCCGGCAAGC GGCCTTCAAG GGCCTTCGCC AGGACAAGCC CGCCTCGGAG
GTCGAAGCCG AGACGCCGGC GCCAGCTGAC AGCGCCGGCA TCGCAAAGCC TGCACCGGCG
CTGCGGACCA AGTCCTCCGC GAGCCTCCCT TCCGCTGCAA AGGGCGGTAT TGTCATGGGG
GTGCCCCTGA GCCGGCCGGA TAAGATCCTA TGGCCCGATG ATGGGCAAGG ACCGATCACC
AAACTCGACC TCGCCCTGTA TTACGAAAGC GTGGGCGCTC GGATGATGGA GCATCTCAAG
GGCCGTCCAT GCTCGATAAT ACGAGCCCCG GACGGTATCG AAGGACAGCG CTTCTTTCAG
CGCCATTCGA TGAAGGGCGG CTCCAGCCTG CTTGAGGAGG TCACCGTCTC CGGCGATCGA
AAACCCTATG TGCAAATCGA CCGGATCGAG GGTCTGGCCG CCGTGGCGCA GAGTGCCGGT
GTGGAGTTGC ATCCATGGAA CAACCAGCCC GGCGACCCCG CCCTTCCCGG CCGGCTTGTT
TTCGATCTCG ACCCGGCGCC GGATGTGGAC TTCGCGGTCG TGATCGACGC CGCCAAGGAA
ATGCGCGACC GCCTCTCCCA GCTTGGCCTC GTGTCGTTCT GCAAGACCAC CGGCGGCAAA
GGCTTGCATG TCGTTACGCC GCTCGCGCGC CCGAAAAAAG GACAACGACT GGACTGGGCC
GCAGCGAAGC AGTTCGCCCG CGACGTGTGC AGCCAAATGG CACGCGAAAG TCCGGACCGA
TACCTCATCA ACATGAGCAA GGCGAAGCGA ACGGGAAAGA TATTTCTCGA CTATTTGCGG
AACGATCAAT TCTCGACCGC GGTGGCGCCA CTCTCTCCCC GGGCGCGCGC CCATGCGCCG
GTCTCAATGC CGATCACGTG GGCCAAGGTC AAACCTGGCC TCGATCCCAT GCAATACACC
ATCCGCACCG TGCCCCAGCT TCTCAAGAAG TCGAAGGCGT GGTTCGAATA CTGCGAAAGT
GAACGCCCGC TTTTGGACCC GATCGCTAAA CTGGCAAGAC GGTCGACAAA GCTGGCAGCT
TGA
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| Protein sequence | MVKKLLVKYR AKRDFSKTAE PSGNLKVKPS KSLRFVIQKH AASHLHYDLR LELDGVFKSW
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMVWDRGY WECDDPERAY
QKGKLDFTLE GEKLHGGWIL TRMRKREGEK RTNWLLIKHR DEFAREGKKN RILQEDTSVA
SSRSMDQITA GKGKGPKPFV AAKRSRAPAK AEWKPHRASA RASTPRKRSA PDRSRAGRSP
EKKAGEKGNA IADRSMPPFI APQLCSLVER PPSGSDWIHE IKFDGYRIQM RVENSDVSLK
TRKGLDWTPK FGAIAKAADA LPDCIVDGEI VALDHRGSPD FAGLQAALSD GKSDDLIFFA
FDLLFLKGDD LRRQSLADRK QALKKLIEKT YGKDQVQAEI RYVEHFESGG EAVLKSACRM
SLEGIVSKQT AARYVSGRTE SWSKAKCRAG HEVVIGGWKS NGNQFKSLMA GIYRGDHLVY
VGNVGTGYSA EKVARLMPRL KAAASATNPF VGNNAPRKKA GMHWLKPELV AEIEFAGFTG
AGMIRQAAFK GLRQDKPASE VEAETPAPAD SAGIAKPAPA LRTKSSASLP SAAKGGIVMG
VPLSRPDKIL WPDDGQGPIT KLDLALYYES VGARMMEHLK GRPCSIIRAP DGIEGQRFFQ
RHSMKGGSSL LEEVTVSGDR KPYVQIDRIE GLAAVAQSAG VELHPWNNQP GDPALPGRLV
FDLDPAPDVD FAVVIDAAKE MRDRLSQLGL VSFCKTTGGK GLHVVTPLAR PKKGQRLDWA
AAKQFARDVC SQMARESPDR YLINMSKAKR TGKIFLDYLR NDQFSTAVAP LSPRARAHAP
VSMPITWAKV KPGLDPMQYT IRTVPQLLKK SKAWFEYCES ERPLLDPIAK LARRSTKLAA
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