Gene Nham_3900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3900 
Symbol 
ID4032656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand+ 
Start bp4278058 
End bp4278738 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content58% 
IMG OID637972278 
Producttransposase, IS111A/IS1328/IS1533 
Protein accessionYP_579052 
Protein GI92119323 
COG category[L] Replication, recombination and repair 
COG ID[COG3547] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.528596 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAT ATGTTGGGCT TGATGTCTCG CAAAAGGAGA CTTCAGTGTG CGTGGTCGAC 
GAAGTAGCTC AGATCTTGTT TGAGGGAAAG GCCAAGTCCG ATCCGGGGGC GCTCACCGCG 
CTGCTTCGCG AGCGGGCGCC GCATGCGGAG CGCATCGGTT TTGAGACGGG GGCGATGGCA 
AGCTGGCTAT GGCATGAACT TCGTAGGGTC GATCTTCCAG TGGTATGCAT CGACGCTCGG 
CATGCGCACG CGGCTTTGTC AGTGCGCATG AACAAGAGCG ATCAGAATGA CGCTCGAGGC 
CTGGCTGAAC TGGTGCGGGT CGGTTGGTAT CGAGAGGTAA AGGTCAAGAG CGAAGATAGC 
CAGAAAATCC GCGCGATACT CGTCGCGCGA TCCCGGCTTG TGGCCATTCG CCGGGATATC 
GAGAACCAAG TCCGCAGCCT GGTCAAGGAA TATGGGTTAC TGTTCCCGCG CGCGATCGGC 
AAACAGTTCC GTAACCAGGT CAGCGAGCTG TTGGGCGAGG ATCATCAACT TCTCGGCGTG 
ATCGCGCCGC TCTTGTCGAT CCATGAACAT ATCTGCGAGC AGCAGAGCAA GTTCGACGAC 
GAAGTCCGCC GGTTGGCCAA GTCAGACGAG ACGACACGTC GCCTGATGAC GGTTCCTGGT 
GTCGGCGCGA CAACTTCATA A
 
Protein sequence
MKQYVGLDVS QKETSVCVVD EVAQILFEGK AKSDPGALTA LLRERAPHAE RIGFETGAMA 
SWLWHELRRV DLPVVCIDAR HAHAALSVRM NKSDQNDARG LAELVRVGWY REVKVKSEDS 
QKIRAILVAR SRLVAIRRDI ENQVRSLVKE YGLLFPRAIG KQFRNQVSEL LGEDHQLLGV 
IAPLLSIHEH ICEQQSKFDD EVRRLAKSDE TTRRLMTVPG VGATTS