| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3852 |
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| Symbol | |
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| ID | 4030187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 4231992 |
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| End bp | 4232939 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637972241 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_579015 |
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| Protein GI | 92119286 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAGAGC GTACAAAATC GCGGGCGAAG CAGCGCACCG GTGGCACCAG GCCCACGGCG
ATGCCGGGAT TCATCAAGCC GCAGCTGGCG ACGTTGCGCA CAAATGCGCC GCGACAAAGT
GGCTATCTCC ATGAAATCAA ATACGACGGC TACCGCGTGC AGCTGCACCT CGACCAGGGC
AGGGGCAAGG CCTACACTCG CAATGGGCTC GACTGGACGA AGCGCTTTTC AGAGATTGTC
GCCGCGTTCG ACATCCCCGG TCAGGCCATC GTGGATGGGG AGGTCGTGGT TGTCCATGAA
GGCCGCACGA ATTTCTCCGA GCTGCAGGCA GACCTCGCCA GAGGCGACCA GAGCCGTTTG
CTGTATTACG CCTTTGACCT GCTGTGGCTG GATGGCCGAG ACCTACGCAA CACGCCGCAG
GTTGAGCGCA AGGCGCTGCT CAAGGAGCTG TTCGACACTT ACGCGCTCAA GGCCCCCGCG
CTCTACAGCG AGCATCTGGA AGGGGACGGC CAGGCATTAT TCGAGCACGC CGCAAAGCTC
AACTACGAGG GCATAGTCTC GAAGAAGGCC GCCGCGCCAT ATCGCTCCGG CCGCAACGAC
AACTGGCTCA AGGTCAAAAC CGTTCAGCGC GGCAAATTTC CCGTGGTGGG ATTCATCAAA
GACCCCAGCG GCATTGCCGC GTTGTATCTC GGCAGGCGCG AGGGCAAACA ACTCGTTTAC
ATGGGCAAGG TCGGCACGGG CTGGAGCCGC ACGACATCAA GCAGCATCAG GAAGGCCCTC
GACCAGGTCG TGAGCCCGAA AAGCAAGCTG AGCAAACCGC TCAGGAAACC CAAGGCGACG
TGGGTTGAAC CTGTTTTCAC GGCAGAGGTT GAGTACCGTG ACATCACCTC CGAGGGCCTG
CTGCGCGCCA GCTCGTTCAA GGGGCTGACG AGGCAGAGCA AGAGCTGA
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| Protein sequence | MVERTKSRAK QRTGGTRPTA MPGFIKPQLA TLRTNAPRQS GYLHEIKYDG YRVQLHLDQG
RGKAYTRNGL DWTKRFSEIV AAFDIPGQAI VDGEVVVVHE GRTNFSELQA DLARGDQSRL
LYYAFDLLWL DGRDLRNTPQ VERKALLKEL FDTYALKAPA LYSEHLEGDG QALFEHAAKL
NYEGIVSKKA AAPYRSGRND NWLKVKTVQR GKFPVVGFIK DPSGIAALYL GRREGKQLVY
MGKVGTGWSR TTSSSIRKAL DQVVSPKSKL SKPLRKPKAT WVEPVFTAEV EYRDITSEGL
LRASSFKGLT RQSKS
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