Gene Nham_3748 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3748 
Symbol 
ID4032485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp4127410 
End bp4129335 
Gene Length1926 bp 
Protein Length641 aa 
Translation table11 
GC content65% 
IMG OID637972157 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_578932 
Protein GI92119203 
COG category[I] Lipid transport and metabolism 
COG ID[COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.159285 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATTC AGGAGAAGAG CCGCTACCGC GAGGTCTACG CCCGCGCGCT TAGCGATCCC 
GACGGGTTCT GGGCCGACGC CGCGCGCGAC ATCGACTGGA TCGAGCCGGC GAAAAAGACC
TTCGACCCCG CGATGGGGCT TTATGGCCGC TGGTTCGCCG GCGCCGTGGT CAATACCTGC
TACAACGCGC TGGACCGCCA TGTCGCCGCC GGCCGGGCCG ATCAGGTCGC GCTGATCCAT
GATTCGCCGC TGGCCAATCC GGGCGGGCCG AGCGTCATTA CCACCTTCAC CTATGCCGAA
CTGCTCAAGG AGGTGCAGAC GCTCGCCGCG GTCATGCAGG ATTTCGGCGT CGCCAAGGGC
GACCGCGTCG TACTTTACAT GCCGATGGTG CCCGAGGCGG TGGTGGCGAT GCTGGCCTGC
GCGCGGATAG GCGCGGTGCA CTCCGTGGTG TTTGGCGGCT TTGCGGCCAA GGAGCTTGCG
ACCCGGATCG ACGATGCCAA GCCGAAGCTG ATCTTTTCAG CGAGTTGCGG CCTGGAGCCG
GGCCGCATCG TGCAGTACAA GCCGCTGCTC GACGAGGCAC TGAAACTTGC CACCGCCGGG
CCCGGCGCGT GCATCATCCT GCAACGGCCG CAGCAGCGCT GCGACTTGAT CGCGGGCCGC
GATCACGACT GGACGACGCT GCGCGATGCC GCGATGGCGG CGAAGAAGTC CGCGCCTTGC
GTGCCGGTGC TCGCCACCGA TCCGCTCTAT ATTCTCTACA CTTCCGGCAC CACCGGGGTG
CCGAAAGGCG TGGTGCGCGA CAATGGCGGC CATCTGGTCG CGCTGAAATG GTCGATGTTC
AACCTCTATG GCGTCAAGCC CGGCGAGGTC TGGTGGTGCG GCTCCGATAT CGGCTGGGTG
GTCGGCCACA GCTACATCGT CTACGGGCCG CTGATTCACG GCACGACCAC GATCATGTAC
GAAGGCAAGC CGATCGGCAC GCCCGATGCC GGGGCGTTCT GGCGCGTTAT CGCGCAGCAC
AAGGTGGTGG CGTTCTTCAC CGCGCCGACC GCGTTCCGCG CCATCAAAAA GGAGGACCCG
GACGGGGCCT TCATCCGCAA ATATGATCTG TCCGAATTCC GCACGCTGTT TTTGGCTGGT
GAGCGCGCCG ATCCGCCGAC GGTGGAATGG GCGGAGAAGC AGTTGAAGGT GCCGGTGATC
GATCACTGGT GGCAGACCGA AACCGGCTGG GGCATCGTCG GCAACCCGGT CGGGCTCGGG
CAACTGCCGG TCAAACACGG CTCGCCCACG GTCGCGATGC CGGGCTATCA GGTCGATATC
GTCGATGAGG CTGCGAAGCC GCTGCCGGCC GGCACCATGG GTTCGATCGT TATCAAGCTG
CCGCTGCCGC CGGGCTGCCT GCCGACCTTG TGGCAGCAGG ACGAACGCTG CAAGGAAGCC
TATTTCAACG AGTTTCCCGG CTACTACAAA ACCTCCGACG CGGGCTACAA GGACGAGGAC
GGCTACATCT TCGTCATGGG CCGCACCGAC GACATCATCA ATGTCGCCGG TCATAGGCTG
TCCACCGGCG GCATGGAGGA AATTCTCGCC TCGCATCCCG ATGTCGCGGA ATGCGCGGTG
CTCGGCATCA GTGACACCAT CAAGGGCGAG GTGCCGTGCG GCCTCTTGGT GTTGAAGGCC
GGCGTGACGC GCGACGGCGC CGAGATCGAG AAGGAGGTCG TGGCGCTGGT GCGCGAGAAG
CTCGGTCCGG TCGCGGCATT CAAGCTCGCG ATCACGGTGA ACAGGCTGCC GAAGACGCGC
TCCGGAAAAA TCCTGCGCGG CACCATCAAG AAGATCGCGG ATGGCGAGGC ATGGACGATG
CCCGCGACCA TCGAGGATCC GAAGGTGCTC GACGAGATTC AAAGCGCGTT AAAGAGCAGG
ATGTAG
 
Protein sequence
MSIQEKSRYR EVYARALSDP DGFWADAARD IDWIEPAKKT FDPAMGLYGR WFAGAVVNTC 
YNALDRHVAA GRADQVALIH DSPLANPGGP SVITTFTYAE LLKEVQTLAA VMQDFGVAKG
DRVVLYMPMV PEAVVAMLAC ARIGAVHSVV FGGFAAKELA TRIDDAKPKL IFSASCGLEP
GRIVQYKPLL DEALKLATAG PGACIILQRP QQRCDLIAGR DHDWTTLRDA AMAAKKSAPC
VPVLATDPLY ILYTSGTTGV PKGVVRDNGG HLVALKWSMF NLYGVKPGEV WWCGSDIGWV
VGHSYIVYGP LIHGTTTIMY EGKPIGTPDA GAFWRVIAQH KVVAFFTAPT AFRAIKKEDP
DGAFIRKYDL SEFRTLFLAG ERADPPTVEW AEKQLKVPVI DHWWQTETGW GIVGNPVGLG
QLPVKHGSPT VAMPGYQVDI VDEAAKPLPA GTMGSIVIKL PLPPGCLPTL WQQDERCKEA
YFNEFPGYYK TSDAGYKDED GYIFVMGRTD DIINVAGHRL STGGMEEILA SHPDVAECAV
LGISDTIKGE VPCGLLVLKA GVTRDGAEIE KEVVALVREK LGPVAAFKLA ITVNRLPKTR
SGKILRGTIK KIADGEAWTM PATIEDPKVL DEIQSALKSR M