| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3618 |
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| Symbol | sdhA |
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| ID | 4030388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3983791 |
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| End bp | 3985614 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637972030 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_578806 |
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| Protein GI | 92119077 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.241397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGTAA ACGGCAGCGC GGCGGCGGCC GCCAACGGCA AGGCCTATCC CATCGAAGAC
CATACTTACG ACGTCGTCGT CGTCGGCGCC GGCGGGGCCG GCCTGCGGGC CACTGTGGGT
TGCGGCAAGG CCGGCCTGCG CACCGCTTGC ATCACAAAGG TCTTTCCGAC GCGGTCCCAT
ACCGTAGCCG CGCAAGGCGG CATCTCCGCC TCGCTCGGCA ACATGCACAA GGACGACTGG
CGCTGGCACA TGTACGATAC CGTCAAGGGA TCGGACTGGC TCGGCGATCA GGATTGCATC
GAGTACATGG TGCGTAACGC ACCGGAGGCA GTCTACGAAC TCGAGCACTG GGGCGTGCCG
TTCTCGCGCA CCGAAGAGGG CAAGATCTAC CAGCGCCCGT TCGGCGGCAT GACCATCGAT
TACGGCAAGA GCCAGGCCCA GCGCACCTGC GCCGCCGCCG ACCGCACCGG CCACGCCATG
CTGCACACGA TGTACGGCCA GGCGCTGCGC CACGCCGCCG AATTCTTCAT CGAGTTCTTC
GCCATCGACC TCATCATGGA CGATCAGGGC GTCTGCCGCG GCGTGATCGC GCTGAAGCTC
GACGACGGCA CGCTGCACCG CTTCCGCGCC CAGACCACCA TTCTGGCCAC CGGCGGCTAC
GGGCGCGCCT ATGCCTCCTG CACCTCGGCG CACATCTGCA CCGGCGACGG CGGCGGCATG
GCGCTACGCG CCGGCCTGCC GCTGCAGGAC ATGGAGTTCG TCCAGTTCCA CCCGACCGGC
ATCTACGGTT CGGGCTGCCT CGTCACCGAA GGCGCGCGCG GTGAAGGCGG CTACCTCGTC
AACGCCGAGG GCGAGCGCTT CATGGAACGC TATGCGCCCT CCGCCAAGGA CCTCGCCTCG
CGCGACGTCG TCTCGCGCGC GATGACGATC GAAATTCGCG AAGGCCGCGG CGTCGGCAAG
AAGAAAGACC ACATCTTCCT GCACCTCGAC CATCTCGACC CGAAAGTGCT GCACGAGCGG
CTGCCGGGTA TTTCGGAGTC GGTGAAGATC TTCGCCGGCG TCGACGTGAC CCGCGAGCCG
ATCCCGATCT TGCCGACCGT GCACTACAAC ATGGGCGGCA TCCCAACCAA CTACCATGGC
GAAGTCGTCA CCAAAAAGAC CGGCGACGAC AATGCGCTCG TGCCGGGCCT GATGGCGGTG
GGCGAAGCCG CCTGCGTCTC CGTGCACGGA GCCAACCGCC TCGGCTCCAA CTCGCTGATC
GATCTCGTGG TGTTCGGCCG CGCCGCCGCC CTGCACTGCG CCGAAAAGCT CACCGCCAAT
GCCAGGCAGC CCGATCTCCC CGCGAACTCC GGCGAGATGG CGCTCAGTCG CCTCGACCGG
TTTCGCTACG CCTCCGGCGG TACGCCGACC GCCAGGCTGC GCGAGAGCAT GCAACGTGTG
ATGCAGGCCA ACTGCGCGGT TTTCCGCACC CACGACATCC TGACGGAGGG TCAGAAACTG
ATCCACGAAG TCCATGACGG GATCGCCGAC GTCGCCGTGT TCGATCGCTC GCTGGTGTGG
AACACGGACC TGATGGAGAC GATGGAATAC GACAACCTCA TCTCCCAGGC GGTGGTGACG
ATGGATTCCG CCGCCAACCG TACCGAGAGC CGCGGCGCCC ATGCGCGCGA GGACTATCCC
GATCGCGACG ATCAGAACTG GATGAAGCAT TCGCTGGCGC GGCTGAGCGA TCGCGGCGTC
ACCACGATCG ACTACCGCCC GGTGCACGAC TACACCATGA CCAACGACGT TCAGTCCATT
CCGCCGAAGG CGCGGGTGTA TTGA
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| Protein sequence | MAVNGSAAAA ANGKAYPIED HTYDVVVVGA GGAGLRATVG CGKAGLRTAC ITKVFPTRSH
TVAAQGGISA SLGNMHKDDW RWHMYDTVKG SDWLGDQDCI EYMVRNAPEA VYELEHWGVP
FSRTEEGKIY QRPFGGMTID YGKSQAQRTC AAADRTGHAM LHTMYGQALR HAAEFFIEFF
AIDLIMDDQG VCRGVIALKL DDGTLHRFRA QTTILATGGY GRAYASCTSA HICTGDGGGM
ALRAGLPLQD MEFVQFHPTG IYGSGCLVTE GARGEGGYLV NAEGERFMER YAPSAKDLAS
RDVVSRAMTI EIREGRGVGK KKDHIFLHLD HLDPKVLHER LPGISESVKI FAGVDVTREP
IPILPTVHYN MGGIPTNYHG EVVTKKTGDD NALVPGLMAV GEAACVSVHG ANRLGSNSLI
DLVVFGRAAA LHCAEKLTAN ARQPDLPANS GEMALSRLDR FRYASGGTPT ARLRESMQRV
MQANCAVFRT HDILTEGQKL IHEVHDGIAD VAVFDRSLVW NTDLMETMEY DNLISQAVVT
MDSAANRTES RGAHAREDYP DRDDQNWMKH SLARLSDRGV TTIDYRPVHD YTMTNDVQSI
PPKARVY
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