| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3578 |
|---|
| Symbol | |
|---|
| ID | 4030906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3935731 |
|---|
| End bp | 3937266 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637971990 |
|---|
| Product | signal recognition particle protein |
|---|
| Protein accession | YP_578767 |
|---|
| Protein GI | 92119038 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.715062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACA ATCTGTCGGA AAGGCTCGGT GGCATTCTTG ATCGGCTGAC GCGGCGCGGC
GCGCTGACGG AAGCCGATGT CGATGCCGCC ATGCGCGAGG TGCGCCGGGC GCTGCTCGAG
GCCGACGTCT CGCTCGATGT CGTCAGAAGC TTTACCGACA AGGTCCGCGA GCAGGCGATC
GGCGCCACCG TCGTCAAATC GGTGACGCCG GGCCAGATGG TGGTGAAGAT CGTCCATGAC
GAGCTGATCG CCACGCTCGG TGCCGACGGC CAGACCATCG ACCTCAATGG GGTGCCGCCG
ATCACCATCA TGATGGTCGG CCTGCAGGGC TCGGGCAAGA CCACCACGAC AGCAAAGCTG
GCGCGACGGC TGACCGAGCG CGACAAACGT AAAGTCCTGA TGGCCTCGCT CGACATCTAT
CGGCCGGCAG CGATGGAGCA GCTCGCGGTG CTCGGCCGCG ATCTCGATAT CCAGACGCTG
CCGATCCTCG CGGGCCAGAA GCCCGAGCAG ATCGCGCGCC GCGCGCTGGA AGCCGGCAAG
CTTGGCGGTT ACGACGTGGT GCTGCTCGAC ACCGCCGGCC GCACCACGCT CGACAACGAA
ATGATGTCCG AGGCGGCGAA CATCAAGGCC GCCGCCCGCC CGCACGAAGT GCTGCTGGTT
GCGGACTCGC TGACCGGCCA GGACGCGGTC AACCTCGCGC GCTCGTTCGA CGAGCGCGTC
GGCCTCACCG GCATCGTGCT GACTCGAGTG GACGGCGACG GCCGCGGCGG CGCCGCGCTA
TCGATGCGTC AGGTCACCGG CAAGCCGATC AAGCTGATCG GTACCGGCGA AAAAACCGAC
GCGCTGGAGG ATTTCCATCC CTCCCGCATC GCCGGCCGCA TCCTCGGCAT GGGCGACGTG
GTCACGCTGG TCGAAAAGGC CGCCGCCAAT ATCGACGCCG AAAAAGCCGC GCGCACGACC
GAGAAGATGC GCAAGGGCCA GTTCGACCTC AACGACATGC GCGAGCAGTT GTTGCAGATG
ACGAAAATGG GCGGCGTATC CGGCCTGATG GGCATGATGC CCGGCGTCGC CAAGATGAAG
AACCAGATCG CCGCAGCCGG TCTCGACGAC AGGATTATCA AACGTCAGGT CGCGGTGATC
GATTCGATGA CGCGACAGGA GCGCAAGCAT CCCGATATCC TGAAGGCCAG TCGCAAGCGG
CGCATCGCTG CCGGCGCCGG CCAGAAGGTC GAGGAGATCA ACAAGCTGCT CAAGATGCAT
CGCAGTATGG CCGACATGAT GAAGATGATG GCAACCGGCA AGCGCGGCGC GCTCGCCGGC
ATCGCGCAGG CGATGGGCTT TGGAGGGGGC ATGCCGAGCC CCGAACAGAT GAAAGCGCTG
GCGGAAAAAA TGCCGAAAGG CGCCGACGGC CTGCCGCAAA TGCCGAAGGA TCTGCCGGCG
GGATTGCGCG GCGGCCTACC TAACCTTCCC GGCCTCACCG GACTTGGCGG CAAGCCGACG
CTGCCCGGCC TCGGCTTTCC CCGGAAGAAG AAATGA
|
|---|
| Protein sequence | MFDNLSERLG GILDRLTRRG ALTEADVDAA MREVRRALLE ADVSLDVVRS FTDKVREQAI
GATVVKSVTP GQMVVKIVHD ELIATLGADG QTIDLNGVPP ITIMMVGLQG SGKTTTTAKL
ARRLTERDKR KVLMASLDIY RPAAMEQLAV LGRDLDIQTL PILAGQKPEQ IARRALEAGK
LGGYDVVLLD TAGRTTLDNE MMSEAANIKA AARPHEVLLV ADSLTGQDAV NLARSFDERV
GLTGIVLTRV DGDGRGGAAL SMRQVTGKPI KLIGTGEKTD ALEDFHPSRI AGRILGMGDV
VTLVEKAAAN IDAEKAARTT EKMRKGQFDL NDMREQLLQM TKMGGVSGLM GMMPGVAKMK
NQIAAAGLDD RIIKRQVAVI DSMTRQERKH PDILKASRKR RIAAGAGQKV EEINKLLKMH
RSMADMMKMM ATGKRGALAG IAQAMGFGGG MPSPEQMKAL AEKMPKGADG LPQMPKDLPA
GLRGGLPNLP GLTGLGGKPT LPGLGFPRKK K
|
|---|
| |