| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3575 |
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| Symbol | dapF |
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| ID | 4030903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3932849 |
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| End bp | 3933721 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637971987 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_578764 |
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| Protein GI | 92119035 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCACGC TCGCAAACCA CGCTTTCAGC AAGATGAACG GCATCGGCAA CGAGATCGTC
GTGGTCGATC TGCGTGACCG TCCCGCCGCG GTGACGGCCG AGGAGGCGCG CGCGGTCGCA
TCGCCGGGCG GCGTTCCCTA TGATCAGTTG ATGGTGCTGC AACCCCCGCG GCTTCCCGGC
ACCGAGGCTT TCGTCAGCAT CTACAATAAC GACGGTTCGG AAGCGAATGC CTGCGGCAAC
GGCATGCGCT GCGTGGCGCG GCAGGTGTTC GAGGCCACAG GCAAGGCGGC GCTGACCTTC
GAGACCCGCG CCGGGCTGTT GAGTTGCTGG CAGGGTCCCG CGCCTGGTCT TTACACCGTC
GACATGGGAC CGCCAAAATT CGGCTGGCGG GACATCCCGC TCGCCGAGGA ATTCCGCGAT
ACCCGCTATA TCGAATTGCA GGTCGGGCCG ATCGATGCGC CGGTGCTGCA TTCGCCGTCG
GTGGTCAGCA TGGGCAATCC GCACGCGATC TTCTGGGTCG ACGACGTGAA CGCCCATGAT
CTCGAACGCT TCGGGCCGCT GCTGGAGAAC CATCCGATCT TCCCCGAGCG TGCCAACATC
ACGCTGGCCC ATATCGCGGG CCGCGATCGC ATCGTGATGC GGACCTGGGA GCGCGGCGCG
GGTATGACCA AGGCCTGCGG CTCGGCGGCC TGCGCGACGG CGGTGGCAGC GGCGCGGCTC
AAGCGCGCCG ACCGCGTTGT CGATATGGTG CTCCCCGGCG GCGGTCTGAC CATCGAGTGG
CGCGAGCGCG ACGATCATGT GCTGATGACC GGTCCGGCCG TGTTCGAATA TGCCGGCACC
TTCGATCCGG CGCTGTTCGC CAGCGTCGCG TGA
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| Protein sequence | MGTLANHAFS KMNGIGNEIV VVDLRDRPAA VTAEEARAVA SPGGVPYDQL MVLQPPRLPG
TEAFVSIYNN DGSEANACGN GMRCVARQVF EATGKAALTF ETRAGLLSCW QGPAPGLYTV
DMGPPKFGWR DIPLAEEFRD TRYIELQVGP IDAPVLHSPS VVSMGNPHAI FWVDDVNAHD
LERFGPLLEN HPIFPERANI TLAHIAGRDR IVMRTWERGA GMTKACGSAA CATAVAAARL
KRADRVVDMV LPGGGLTIEW RERDDHVLMT GPAVFEYAGT FDPALFASVA
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