Gene Nham_3560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3560 
Symbol 
ID4032597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3916805 
End bp3917794 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content59% 
IMG OID637971972 
Productthiosulphate-binding protein 
Protein accessionYP_578749 
Protein GI92119020 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1613] ABC-type sulfate transport system, periplasmic component 
TIGRFAM ID[TIGR00971] sulfate/thiosulfate-binding protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTCGTC GTGTTTTCGT TGTTCTTGCC GGATTGATCT GGGCAGGTTC GGCGTATGCT 
GCCGACGTGT CGCTATTGAA TGTCTCATAC GATCCGACGC GCGAGCTCTA CGTCGATTTC
AACAAGGCAT TCGCCGCGGC TTACCAGAAA GAAACCGGCA AGAGCGTCGA GATCAAGCAG
TCCCACGGCG GGTCCGGAAA GCAGGCGCGT TCGGTGATCG ACGGTTTGCA GGCCGACGTG
GTTACCCTCG CGCTCGCCTA TGATATCGAT GCGATTGCCG AGCGGGGGCT GCTCGCCAAG
GACTGGCAGA AGCGGTTGCC GCGAAATTCC TCGCCCTATA CGTCCACCAT CGTTTTCCTT
GTGCGCAAGG GCAATCCCAA GGGTATCAAG GACTGGGACG ATCTGATCAA ACCCGGCGTC
CGCGTCATCA CGCCCAATCC CAAGACCTCG GGCGGCGCGC GCTGGAACTA TCTCGCGGCA
TGGGGTTTCG CGCTGAAGAA GTTCGGCAGC GAGGACAAGG CGAAACAGTT TGTGGCCGAC
ATCTACACCC ACGTCCCGGT GCTCGATACC GGCGCGCGTG GTTCCACTGT CACCTTCGTC
GAGCGCGGCG TTGGCGACGT GTTGCTCGCC TGGGAGAACG AGGCCTTTCT GGCGCTCAAG
GAGTTCGGAA AGGACAAATT CGAGATCGTG GTGCCTTCGA TCTCCATTCT GGCGGAACCG
CCGGTCGCCG TCGTCGACAA AGTAGTGGAC AGGAAGGGAA CGCGCGCTGT TGCCGAGGCG
TATCTGAAAT ATTGGTATAC TCGGGAAGGG CAGGAGATCG CCGCGCGAAA CTACTACCGT
CCGACCGATC CGGAAGTGAT CAAGGAGTAT GCCGATGCAT TTCCCAAGGT CGAGCTGTTC
AGGATCGACG ACGTGTTCGG CGGTTGGACC AAGGCGCAGA AGGTCCACTT CGGCGAAGGC
GGCATCTTCG ATCAGATCTA CCAGAACTGA
 
Protein sequence
MLRRVFVVLA GLIWAGSAYA ADVSLLNVSY DPTRELYVDF NKAFAAAYQK ETGKSVEIKQ 
SHGGSGKQAR SVIDGLQADV VTLALAYDID AIAERGLLAK DWQKRLPRNS SPYTSTIVFL
VRKGNPKGIK DWDDLIKPGV RVITPNPKTS GGARWNYLAA WGFALKKFGS EDKAKQFVAD
IYTHVPVLDT GARGSTVTFV ERGVGDVLLA WENEAFLALK EFGKDKFEIV VPSISILAEP
PVAVVDKVVD RKGTRAVAEA YLKYWYTREG QEIAARNYYR PTDPEVIKEY ADAFPKVELF
RIDDVFGGWT KAQKVHFGEG GIFDQIYQN