Gene Nham_3554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3554 
Symbol 
ID4032591 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3911386 
End bp3912174 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content65% 
IMG OID637971966 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_578743 
Protein GI92119014 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAACC TGAAAGGCAA GACCGCGGTA GTGACCGGCT CGACCAGCGG CATCGGCCTC 
GCCTATGCCC GCGCCTTTGC GAGTGCCGGC GCCAATATCG TGATCAACGG GTTCGGCGCG
CCGGCCGACA TCGAGAAGGA ACGCTCCGCC ATCGAGGCCG AGTTCAAGGT CAGGGCGGTC
CATTCGCCCG CCGACATGAC AAAACCCGCC GAGATCGCCG GCATGATTGC GCTGGGCGAA
ACGACCTTCG GCTCGGTCGA TATTCTCGTC AACAATGCGG GTATCCAGTT CGTCGCGCCG
GTCGAGGAGT TTCCCATCGA GAAGTGGGAC GCGATCATCG CTATCAACCT GTCGTCGGCG
TTCCACGCCA TCCGCGCCGC TGTCCCCGGC ATGAAGACGC GCGGCTGGGG CCGCATCATC
AACACCGCCT CGGCGCATTC GCTGGTGGCC TCGCCCTTCA AGTCGGCCTA CGTCTCCGCC
AAGCACGGCA TCGCCGGCCT CACCAAGACG GTGGCGCTGG AGCTTGCGGC CCACAAGATC
ACCTGCAACT GCATCAGCCC CGGCTATGTC TGGACGCCGC TGGTCGAGAA GCAGATCCCC
GACACCATGA AGGCGCGCGA CATGACCAAG GAGCAGGTCA TCAACGACGT GCTGCTTGCG
GCGCAGCCGA CCAAGCAGTT CGTCACCGTG GAGCAGGTCG CCGCCCTGGC GCTCTTTCTG
TGCGGCGACG ATGCCAGCCA GATCACCGGA AGCAACCTGT CGATCGACGG CGGCTGGACG
GCGGAGTAG
 
Protein sequence
MTNLKGKTAV VTGSTSGIGL AYARAFASAG ANIVINGFGA PADIEKERSA IEAEFKVRAV 
HSPADMTKPA EIAGMIALGE TTFGSVDILV NNAGIQFVAP VEEFPIEKWD AIIAINLSSA
FHAIRAAVPG MKTRGWGRII NTASAHSLVA SPFKSAYVSA KHGIAGLTKT VALELAAHKI
TCNCISPGYV WTPLVEKQIP DTMKARDMTK EQVINDVLLA AQPTKQFVTV EQVAALALFL
CGDDASQITG SNLSIDGGWT AE