| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3549 |
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| Symbol | |
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| ID | 4030532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3903543 |
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| End bp | 3906425 |
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| Gene Length | 2883 bp |
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| Protein Length | 960 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637971961 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_578738 |
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| Protein GI | 92119009 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.708242 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACATTGC GTCCGGTCAG GTGGCTTGCG TGTCTCGCGC TGGCCTTCAT GATTTTCGTC
GCGGCATCGC CGGCACGCGC GATCGACGCC GTCAGCGTCC GCAGCGACGC GCCCGCCATC
GACCTCACCG CCATCCTCGA TCATCAGCAC AGCGACTCCG ACCGCATTCA GGTCTCGACC
GCGCCGGGCA CCGACGGCAT CGTCCGCCGC GTCGAGGTGC GCGCGCGCGA AGGTGGCCAG
AACTGGGTGG TGTTCGCGCT CGCCAACAAC ACCGACGATC AACTCGACCG CCTGATCGTC
GCACCGCACT ACCGCCTGGT GTCGTCGGGG TTGCTCTGGC CGGACCTTGG ACAATCGCGC
ATCGCGACCA TCACGCCCTC GACCGGCGAT CGCCCCGAGC GGCAGGAGAG CGCCACCGCC
GACGTCTTCC GCATCACGCT CGACCCCGGC GCCGTCATCA CCTTCGTCAT GGAACTGCGC
ACCGACAAGC TGCCGCAGCT CTATCTCTGG GAACCCGACG CCTACAAGGA CAAGATCAAT
TCCTTCACCC TGTATCAGGG CATCGTCATC GGCATCTCCG GGCTGCTGGC GCTGGTGCTG
ACCATCCTGT TCGTGGTCAA GGGCAGCATC ATGTTTCCCG CCGCCGCGGC GCTGGCCTGG
GCGGTGCTGG TCTATATCGG CGTCGATTTC GGCTTCTGGG GCAAGGTGCT CGACATGTCG
GCCGGCGCCG AGCGGGTCTG GCGCGCCTCC GGCGAGGCGA TGCTCGCGGC AACGCTGCTG
GTGTTCCTGT TCGCCTATCT CAATCTCAGC CGCTGGCACG TCCGCTATTC GCACATCACC
CTTGGCTGGC TCGCGTTCCT CGGCTCGCTG GTGGCGCTGG CTCTGTTCGA TCCCGCGGTC
GCCTCCGGCA TCGCGCGGAT GTCGCTCGCG CTGATTGCCG TTTTCGGCTT CGGACTGATC
GTCTATCTCG CGATTCACGG CTTCGACCGC GCGGTGTTGC TGATCCCGAC CTGGTTCCTG
CTGGTGGTGT GGGTCGGCGC CGCCGGAATG ACCGTTGAAG GCAACGTCAC CAACGACATC
GTCGGCCCGG CCCTGCTCGG CGGCCTCGTG CTGATCGTGA TGCTGATCGG ATTCACGGTG
ATGCAGCACG CCTTCGCCGG CGGCGGCGCC ACCGCCGGCG TGGTGTCGGA CGTCGAGCGC
CGCGCGCTGG CGCTGACCGG CTCGGGCGAT CTGGTCTGGG ACTGGGACGT CTCCGCCGAC
AAGGTCTTCA CCAGTCCCGA GACCGAAAGC CTGCTCGGCT TGAAACGCGG CACGCTCGAA
GGCCCGGCGG CGAGCTGGCT GGAAGTGCTG CATCCGCTCG ATCAGGACCG GTTCCGCGCC
GCGCTGGACA GCGTGCTCGA TCAGCGCCGC GGACGGCTGG TGCAGGACTT CCGGCTGCGC
ACGCCCGACG GCCACTTCAT GTGGTTCGCG CTGAAGGCGC GCCCGGTGGT CGGGTCCGAC
GGCGAGGTCT CACGCGTGGT CGGCACCCTC ACCGATGTCA CCGAGGCCAG GAAAGCCGAG
GAGCGGATGC TGCACGACTC GGTGCACGAC AATCTGACCG GCCTGCCCAA CCGCAAGCTG
TTCATCGACC GCCTCAACGC GGTCGCGACC TTCGCCAAGA CCATGCCCAA CCTGCGGCCG
ACGCTGATGG TGATCGATCT CGACCGCTTC AAGCAGGTCA ACGATTCCGT CGGCGTCGCG
GAGGGCGATT CGATCCTGCT GACGCTGGCG CGGCGGCTGA CGCGGATCCT TAAAGCCCAG
GACACGCTGG CGCGGCTCGC CGGCGACCAG TTCGGCCTCA TCCTGATGTC GGAGCAGGAC
CCGGCGCGCA TCACCGCGTT CGCCGAAACC ATCCGCAAGA CCATCCGCGC GCCGATCGCC
TTCAACGACC GGGAGATCTT CCTGACCGCC TCGATCGGTC TCGCGCTGAG CGACCCGCAG
ACGCAATTGA CGGAGGAGAT CGTCAAGGAC GCCGAACTGG CGATGTACCA TTCCAAACGC
ATCGGCGGCG ACCGCATCGA CGTCTACAAG CCGGCGATGC GGGCCCGGAA AACCGACCGG
GTAACGCTCG AAGCGGAGTT GCGTCGCGCC ATCGAGCGGC GCGAAATCGC CATCCTCTAC
CAGCCGATCG TCCGGCTGGA GGACCGCGCG GTCGCCGGAT TCGAGGCGCT GGCGCGCTGG
GATCACCCCA AGCTCGGGCG AATGGCGCCG GACGAGTTCA TCACCATCGC CGAGGAAGCC
GGCCTGATCG TCGATATCGG CACCTTCGTG ATGGACCAGA CCGCGCGCCA GCTCGCGGTC
TGGCAACGCG CCATGCGGTC GCAGACGCCG ATCTTCGCCA GCGTCAACGT CTCCTCGCGC
CAGTTGCTAC GGCACGACCT GATCAACGAC ATCCGCGCCG TGCTGTCGCG TTCGTCGATC
GCGCGCGGCA CCCTGAAGCT GGAACTGACG GAATCGCTCG TGATGGAAAA TCCGGAACAT
GCCGCGCAGA TGCTGCAACG GATTCGCGAG CTGGGCGTCG GGCTGTCGCT CGACGACTTC
GGCACCGGCC ATTCCTCGCT GTCCTACCTG CAGCGCTTCC CGTTCGATAC CATCAAGATC
GACCAGTCGT TCGTCCGCAC CACAAGCCGC GGCACCCGGC CCGTCATTCT CAAGTCGATC
ATCGCGCTGG CGCACGATCT CGGGATGGAT GTCGTCGCCG AAGGCGCCGA GACCGACTCC
GACGCGGTGG AACTCTATCA ACTGGGCTGT GAATGCGCGC AAGGCTTCGC CTTCGGCGAG
CCGATGGACG CCGATGCAAC GATGCGGCTT CTGGCCCAGG AACGGCTCGC GACCGCAAGC
TGA
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| Protein sequence | MTLRPVRWLA CLALAFMIFV AASPARAIDA VSVRSDAPAI DLTAILDHQH SDSDRIQVST
APGTDGIVRR VEVRAREGGQ NWVVFALANN TDDQLDRLIV APHYRLVSSG LLWPDLGQSR
IATITPSTGD RPERQESATA DVFRITLDPG AVITFVMELR TDKLPQLYLW EPDAYKDKIN
SFTLYQGIVI GISGLLALVL TILFVVKGSI MFPAAAALAW AVLVYIGVDF GFWGKVLDMS
AGAERVWRAS GEAMLAATLL VFLFAYLNLS RWHVRYSHIT LGWLAFLGSL VALALFDPAV
ASGIARMSLA LIAVFGFGLI VYLAIHGFDR AVLLIPTWFL LVVWVGAAGM TVEGNVTNDI
VGPALLGGLV LIVMLIGFTV MQHAFAGGGA TAGVVSDVER RALALTGSGD LVWDWDVSAD
KVFTSPETES LLGLKRGTLE GPAASWLEVL HPLDQDRFRA ALDSVLDQRR GRLVQDFRLR
TPDGHFMWFA LKARPVVGSD GEVSRVVGTL TDVTEARKAE ERMLHDSVHD NLTGLPNRKL
FIDRLNAVAT FAKTMPNLRP TLMVIDLDRF KQVNDSVGVA EGDSILLTLA RRLTRILKAQ
DTLARLAGDQ FGLILMSEQD PARITAFAET IRKTIRAPIA FNDREIFLTA SIGLALSDPQ
TQLTEEIVKD AELAMYHSKR IGGDRIDVYK PAMRARKTDR VTLEAELRRA IERREIAILY
QPIVRLEDRA VAGFEALARW DHPKLGRMAP DEFITIAEEA GLIVDIGTFV MDQTARQLAV
WQRAMRSQTP IFASVNVSSR QLLRHDLIND IRAVLSRSSI ARGTLKLELT ESLVMENPEH
AAQMLQRIRE LGVGLSLDDF GTGHSSLSYL QRFPFDTIKI DQSFVRTTSR GTRPVILKSI
IALAHDLGMD VVAEGAETDS DAVELYQLGC ECAQGFAFGE PMDADATMRL LAQERLATAS
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