| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3539 |
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| Symbol | |
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| ID | 4030522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3894075 |
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| End bp | 3895283 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637971951 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_578728 |
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| Protein GI | 92118999 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAGAT TTAATTCACG ACTGACGTCC GTCGCTTTGT TGATCGCCGG ATTGTCGCCG
CTGCTTGGCG GCTGCGACGA GCCCGTCACC GCGGAAGCCT CGACCAGCGC GATCACCCCG
GAAGTCAGCG TCGTTACGGT GGTTCCGAAG CCGCATGCAA TGGTGCGCGA ACTGCCGGGC
CGCATCGCGC CGCTGCGCGT TGCCGAGGTG CGCCCCCGCG TCTCCGGCAT TATCACCGAG
CGCCTGTTCG AGCAGGGCAG CGAGGTCAAG GCTGGCGATC CGTTGTATCA GATCGATTCA
AAACCGTTCG CGGTCGAATT GCAGGCGGCG GAGGCAGCGC TGGCAAAGGC CGACGCCGTA
TTCGAGCAGG CGTCGCATCA TGCGAGGCGC ATCGAAAAAC TGACGGCCCG GCACGCCACC
TCCGAGGCCG AAAACGAGAA AGCGATCGCC AACATGCGTC AGGCCGAGGC CGATGTCGCC
GGTCGCCAGG CGGACCGCGC GCGGGCGCGG CTCCATCTCG ATTACACCAC CATCCGGGCG
CCGATCGGCG GCGTGGTCGG CGCGGCCCAG GTCACCGAGG GCGCGCTCGT CGTCCAGAAC
GAGACGGCCA GCCTGACCAC GGTGCAACAA CTCGACACCA TCTACGCCGA CTTCACCCAG
TCGGTGAGCG AACTCAACAG CCTGCGCCGT GCATTCGAGA GCGGCGAACT GGAGCGCATC
GCGCCGGGCG CGGCGAAAGT CCGTCTCGTG CTCGACGATG GAACGCTCTA CCCGCTGCCC
GGAAAATTCC TGTTTTCCGA AGCCAAGGTC GATGCCTCGA CCGGGCAGGT GACGCTGCGC
GGCGAATTTC CGAATCCGAA GCGCGAACTG CTGCCGGGTA TGTACGTCCG CGTGCTGCTA
GAGCAGGGCG TTGACAGCGA TGCGATCGCC GTTCCGCAGC AGGCGGTGCA GCGCGACACC
AGCGGCGGCA GCGAGGTCTT CGTCGTCAGG GACGACGATC GCGTGATCGC GCGCCCGATC
CGGACAGCGT CCGTCCAGGA CGGGCTGTCG ATGGTCAGCC AGGGACTCAA GGCCGGCGAC
CGCGTCGTGG TCGAGGGCTT CCAGAAATTC ACCGCCGGCG ACAAGGTTCG CACCGTGATG
TGGGCGGAAG CCGATGCTTC GCGGGAGACC GGAGCGCTGA CGGGCGCCAC AGCGGTTGCC
CGGCAGTAG
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| Protein sequence | MPRFNSRLTS VALLIAGLSP LLGGCDEPVT AEASTSAITP EVSVVTVVPK PHAMVRELPG
RIAPLRVAEV RPRVSGIITE RLFEQGSEVK AGDPLYQIDS KPFAVELQAA EAALAKADAV
FEQASHHARR IEKLTARHAT SEAENEKAIA NMRQAEADVA GRQADRARAR LHLDYTTIRA
PIGGVVGAAQ VTEGALVVQN ETASLTTVQQ LDTIYADFTQ SVSELNSLRR AFESGELERI
APGAAKVRLV LDDGTLYPLP GKFLFSEAKV DASTGQVTLR GEFPNPKREL LPGMYVRVLL
EQGVDSDAIA VPQQAVQRDT SGGSEVFVVR DDDRVIARPI RTASVQDGLS MVSQGLKAGD
RVVVEGFQKF TAGDKVRTVM WAEADASRET GALTGATAVA RQ
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