| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3538 |
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| Symbol | |
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| ID | 4030521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3890901 |
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| End bp | 3894071 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637971950 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_578727 |
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| Protein GI | 92118998 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGCTT TCTTCATCGA CCGGCCTGTC TTTGCCTGGG TGATCGCGCT TTTCATCTGT
CTGATCGGCG CGATCTCGAT TCCGCTGCTG GCGGTGGCGC AGTATCCGAT CATCGCGCCG
CCCTCGATCT CGATCTCGAC CGCGTATCCC GGCGCGTCGC CGCAGAACCT TTACAACAGC
GTCACGCGTC TGATCGAGGA ACAGCTCAAC GGCGCCTCGG GCATCCTCAG TTTCGAATCC
ACCAGCGACT CCCTGGGTCA GGTCGAGATC ACCGCGTATT TCGTTCCCGG CACCCAACTC
GATATGGCGT CGGTGGACGT GCAGAACCGC ATCAAGCGCA TCGAGGCGCG TCTGCCGGCT
GTCGTGCTGA AGGAAGGCAT CCTGGTCGAG GAAGCGTCCA GCGACACGCT GCAGATCGTC
ACGCTGCGCT CGACCGACAA CAGCCTCGAC GAGGTCGGCC TCGGCGATTT CATCATGCGC
AACATCATCG GCGAGATCCG ACGCCTTCCC GGTGTCGGCC GCGCCACGCT GTTTTCCACC
GAACGCTCGC TGCGCGTCTG GATCGATCCC GAGAAGCTGG TCGGCTACGA CCTGACCTCG
GACGACGTCA CCAAGGCGAT CGCGGCGCAG AACGCGCAAG TGGCCTCGGG CAGCATCGGC
GCACCGCCGA GCCGGGCCGG TCAGAAAACC GCGGCGCTGG TCCTGGTGAG GGGGCAACTC
ACCACGCCCG AGGAATTCGG CTCCATCCTG CTGCGCGCCA ACCGCGACGG CTCCACCGTG
CGGCTGCGCG ACGTGGCGCG GGTCGAGGTC GGCGGCATGG ACTACCGGTT CACCACTCGC
CTCAACGGCA AACCGACCGC CGGTCTGTCG GTGATGCTCG CGCCGGGCTC CAACGCGCTT
GCTACCGCGA GCGCGGTGAG AGCCAAGATG CAGGAGTTGT CGAAGTTCTT CCCGGCGACC
ATCGCCTACG ATATCCCCTA CGACATCACG CCGGTGGTGG AGGCCTCGAT CGAAAAGGTT
GTGCATACCC TGATCGAGGC GGTGGTGCTG GTGTTTCTCG TGATGTTCCT GTTTTTGCAG
AACATCCGCT ACACCATCAT TCCGACCATC GTGGTGCCGG TGGCCTTGCT CGGCACCTGT
TCGGTGCTGC TGGTCGCAGG CTACTCCATC AACATGCTGA CGATGTTCGG AATGGTGCTG
GCGATCGGCA TTCTGGTCGA CGACGCCATC GTCGTGGTCG AGAATGTCGA ACGCATCATG
ACCGAGGAGG GGCTGCCGCC GAAGGAGGCC GCGCGCAAGG CGATGTCGCA GATCACAAGC
GCCATCATCG GCATCACGCT GGTGCTGATG GCGGTGTTCG TGCCGATGGC GTTCTTTCCG
GGCTCCGTCG GCATCATCTA CCGGCAGTTC TCCGTCACGG TGGTCGCCGC GATCGCCTTC
TCCGCCCTGA TGGCCCTGTC GCTGACGCCG GCGCTCTGCG CCACGCTGCT GAAGCCGGTC
GAGGCCGGAC ACGGCCACGC GCGCAAGGGC GTGTTCGGCT GGTTCAATCG CACGCTGGAG
GGCGTGCGCG GCCGCTACGT CTCGACCGTC GGCTGGTCGC TGGGGCGGAC CGGACGCCTG
ATGCTGATTT ACGCCGTGCT GGTTGGGGTT CTCGTCTGGG CCTTCGGCCG TCTGCCCGCC
GGCTTCGTGC CGGTGGACGA TCAGGGCTTC ATCACGACAG ACGTGCAGAC GCCGTCGGAT
TCGTCCCACG GCCGGACCGA AGCTGCGGTC GAAGCGGTCG AGAAATATCT GGCCAAACGG
CCCGGCATTG AGGATGTCAC GTTCCTCACC GGTTTCGCCT ATTCGGGGCA GGGCATGAAC
ACGGCGCAAG CGTTCATCAC CCTGAAGGAC TGGTCGGAAC GGCCTGAGAA GGATTCCGCC
GCCAATATCG TTGCTGACGC CAATCGCGAT CTGTCGGCCT CGCTGCGCGA CGCCAAGATC
ACCGCGCTGC AGCCGCCGCC GATCGACAAC CTCGGCAATT CCTCGGGCTT CAGCTTCCGC
CTGCAGGATC GCGGCCAGAA GGGCTATGCG GCATTGATGC AGGCGACCGA TCAGCTGATC
GCGGAGGCCA ATGCCAGTCC GGTCTTGAAG AATGTCTATG TCGAGGGCTT GCCGCCGGCG
CCGCAGATCA ATCTCGTGAT CGATCGCGAG AAGGCCAGCG CTCTTGGTGT CACGTTCGAG
GCCATCAACG ATACCATGAC GACCAATCTC GGCTCGACCT ACGTCAACGA CTTCCCCAAC
CGCGGACGGA TGCAGCGCGT GATCGTGCAG GCGGACCGTG ACGGACGCAC GACGGCGGAC
GACATCCTCA ACTACAACGT CAAGAACAGC AGCGGACGGC TGGTCCCGTT CTCGTCGTTC
GCCTCGATCG ACTGGTCGAA GGGACCGACC CAGATCGTCG GCTTCAACTA CTATCCGGCG
ATGCGCATCA CCGGAGAAGC GCGGCCAGGC TTCACGTCCG GCGACGCCAT CGCCGAGATC
GAGCGGCTTG CAAGCCGTCT GCCGCGCGGC TTCGGCTATG AATGGACCGG CCAGTCGTTG
CAGGAAAAGC TGTCGGGGTC GCAGGCGCCG TTCCTGCTCG CGCTCTCGGC GCTGGTGGTG
TTCCTCTGCC TTGCCGCGCT CTATGAAAGC TGGACCATTC CGCTCGCGGT GCTGCTGACG
GTGCCGCTCG GAATCTGCGG CGCGGTGCTG GCGGCAACCA CGCGTGGGCT TGCCAACGAC
GTCTATTTCA CCGTCGGTCT TGTCACCATC ATCGGCCTGG CCGCGAAGGA CGCCATTCTC
ATCATCGAGT TCGCCAAGGA TTTGCGCGCG CAAGGCAAGC CGCTCCGGGA AGCCACGATC
GAGGCGTGCG CGCTGCGCTT CCGCCCGATT TTGATGACCG GCCTTGCCTT CGTCTCCGGC
GTGCTGCCGA TGGTCGTAGC CCAAGGTGCG GGCGGGGCGA GCCAGCAGGC GCTCGGCACC
AGCGTGATGG GCGGAATGAT CGCGGTGGTG GTGCTGGCGC TGTTGATGGT GCCGGTGTTC
TTCGTCGTCG TGATGCGCGT GCTCGGGCGC GACAAAAGCG GCCTGGAGCC GGAGCCGGTG
GGCGAGCCGG AAATCCACGG GCCGCCGGCG CCGCTGCACG CAGCCGAGTA G
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| Protein sequence | MPAFFIDRPV FAWVIALFIC LIGAISIPLL AVAQYPIIAP PSISISTAYP GASPQNLYNS
VTRLIEEQLN GASGILSFES TSDSLGQVEI TAYFVPGTQL DMASVDVQNR IKRIEARLPA
VVLKEGILVE EASSDTLQIV TLRSTDNSLD EVGLGDFIMR NIIGEIRRLP GVGRATLFST
ERSLRVWIDP EKLVGYDLTS DDVTKAIAAQ NAQVASGSIG APPSRAGQKT AALVLVRGQL
TTPEEFGSIL LRANRDGSTV RLRDVARVEV GGMDYRFTTR LNGKPTAGLS VMLAPGSNAL
ATASAVRAKM QELSKFFPAT IAYDIPYDIT PVVEASIEKV VHTLIEAVVL VFLVMFLFLQ
NIRYTIIPTI VVPVALLGTC SVLLVAGYSI NMLTMFGMVL AIGILVDDAI VVVENVERIM
TEEGLPPKEA ARKAMSQITS AIIGITLVLM AVFVPMAFFP GSVGIIYRQF SVTVVAAIAF
SALMALSLTP ALCATLLKPV EAGHGHARKG VFGWFNRTLE GVRGRYVSTV GWSLGRTGRL
MLIYAVLVGV LVWAFGRLPA GFVPVDDQGF ITTDVQTPSD SSHGRTEAAV EAVEKYLAKR
PGIEDVTFLT GFAYSGQGMN TAQAFITLKD WSERPEKDSA ANIVADANRD LSASLRDAKI
TALQPPPIDN LGNSSGFSFR LQDRGQKGYA ALMQATDQLI AEANASPVLK NVYVEGLPPA
PQINLVIDRE KASALGVTFE AINDTMTTNL GSTYVNDFPN RGRMQRVIVQ ADRDGRTTAD
DILNYNVKNS SGRLVPFSSF ASIDWSKGPT QIVGFNYYPA MRITGEARPG FTSGDAIAEI
ERLASRLPRG FGYEWTGQSL QEKLSGSQAP FLLALSALVV FLCLAALYES WTIPLAVLLT
VPLGICGAVL AATTRGLAND VYFTVGLVTI IGLAAKDAIL IIEFAKDLRA QGKPLREATI
EACALRFRPI LMTGLAFVSG VLPMVVAQGA GGASQQALGT SVMGGMIAVV VLALLMVPVF
FVVVMRVLGR DKSGLEPEPV GEPEIHGPPA PLHAAE
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